Detailed information on CNT0029093


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0000227, E-value = 5e-07 (G. max)
CNT0023291, E-value = 2e-06 (A. trichopoda)
CNT0011121, E-value = 8e-06 (S. tuberosum)

Expression of CNT0029093

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MWRGQQGGCRIYQFMGFACFERGKKSTCCYWNVL*

>peptide 2 (69 aa)
MPRSRCLLSYSISVCLSLVSLLFSASQGWTDSLLMRVGGSMSIYISASRSLSLSLSLCASVLLSSSCLD*

>peptide 3 (82 aa)
MRKTRGESMKGKGKKKEHAKIEMLTQLLYLCLSVSCFSPLLCFSRLDGFFVNEGGWLHEYLYICKSFSLSLSLSVCKCFTVQ*

>peptide 4 (47 aa)
PAPAAAASASSATTAAAATATAPSRLAGLTVHRKLSEVVVGHGCGCS*

>peptide 5 (115 aa)
PPPPPPLAPPRPPRPPRPPRPRPPGWPGSPSTGSSPKLLSAMAAVALELGERFRCGGDSKGVVVFINLWDLLALKGGRRAHAAIGMYYNFSEGTQEQAAA
IEASKNQKKKGIQAI*

Sequence

>CNT0029093
CCCGCCCCCGCCGCCGCCGCTAGCGCCTCCTCGGCCACCACGGCCGCCGCGGCCACCGCGACCGCGCCCTCCCGGTTGGCCGGGCTCACCGTCCACCGGA
AGCTCTCCGAAGTTGTTGTCGGCCATGGCTGCGGTTGCTCTTGAGTTGGGTGAGAGATTCCGATGTGGAGGGGACAGCAAGGGGGTTGTCGTATTTATCA
ATTTATGGGATTTGCTTGCTTTGAAAGGGGGAAGAAGAGCACATGCTGCTATTGGAATGTATTATAATTTCTCAGAGGGCACTCAAGAACAAGCAGCGGC
AATAGAAGCTTCCAAGAACCAAAAAAAAAAAGGAATCCAGGCAATATAACAAGAGCAGAATTGAGGTGAAGAACAGGTCTCTGCAGGAGTTTGTGATGAG
GAAAACAAGAGGAGAATCAATGAAGGGAAAGGGGAAGAAGAAAGAACATGCCAAGATCGAGATGCTTACTCAGTTACTCTATCTCTGTCTGTCTGTCTCT
TGTTTCTCTCCTCTTCTCTGCTTCTCAAGGCTGGACGGATTCTTTGTTAATGAGGGTGGGTGGCTCCATGAGTATTTATATATCTGCAAGTCGTTCTCTC
TCTCTCTCTCTCTCTCTGTGTGCAAGTGTTTTACTGTCCAGTAGTTGTCTTGACTGAAAGGGACTAGGCTAGGTAGGGGTCCAACTGTTACATATACTGT
AATATTGTTTGTTTTGTAAAACATATGCAATTAATGTAATGCTATGGTAAATTTTATTTCTTCT

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS06T0125800-01 E3 ligase; Os06g0125800 protein; Zinc finger protein-like; cDNA clone:006-205-F10, full insert sequence; cDNA clone:J013144A04, full insert sequence protein coding CNT0029093 798 279 UTR5 Cis