Detailed information on CNT0002954


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9SU40|SKU5_ARATH, E-value = 3e-18

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0003834, E-value = 1e-06 (V. vinifera)

Expression of CNT0002954

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MKGREVEKAFSLILHLKLVSPVPLCRNRIVCAKNAILPRSPPLLNCRPFS*

>peptide 2 (73 aa)
MFIEHINEKFYSKIYKKKEKLQFERKNKRLYLSMVEKSRRHINPRQTSVSFTNINTGSVDSANFFFQHVFRTQ*

>peptide 3 (48 aa)
MLVMEEFRKLLLLSDRALFLVEFELWNCATKLSFRKRVSLVTGRRFRNN

>peptide 4 (37 aa)
MFSEPNNNSSSPELFKLSLNIHCSYSFILFKLILKVH*

>peptide 5 (35 aa)
MRNSIVKYIKRKRNCNLKERIRDFTCPWWKNLEGT*

Sequence

>CNT0002954
TCTCGGTATTCAGAAAAGTTTCAACAGCAGCTGCATCCGCTAATGACTTATAAGTTGCTTCAAGAGTGCGTATAGCAACAGTAGTGTCCATGTTCATAGA
ACATATAAATGAGAAATTCTATAGTAAAATATATAAAAAGAAAGAGAAATTGCAATTTGAAAGAAAGAATAAGAGACTTTACTTGTCCATGGTGGAAAAA
TCTCGAAGGCACATAAATCCAAGACAAACCTCTGTTTCCTTCACAAACATAAACACCGGTTCTGTAGATTCTGCCAATTTCTTCTTTCAACATGTTTTCA
GAACCCAATAATAATTCCTCCAGTCCAGAGCTATTCAAGCTCAGCCTCAATATTCACTGTAGCTACTCTTTCATACTATTCAAACTAATTTTAAAAGTTC
ACTAACTTGTCACATGCTTCAAATTTCCAAATAGGGAATAACACATTAACACCATTCAAAATCTGCTTTCAAAAATAATCAAAAACAATTTCAATATTAG
GACATACCACCTAATCCCAATACCCGTGCAACATAGAACTCATTGGAAGAAAAACCAATAGTAGAATTCAAAACATAAAATGGAAACTCACTACTAAGAA
AAACCAATACCTGATAGATAATTGCAGGTGTACCAATCTCCAATGAAAACAATAAGTCCCCATATGGGGTATCAAAAGGAATCAGAATGATGGGCCTGTT
GTTTATTATGATGAAACCCCCAAATCCACCAACAACTCTCTGAAGATGAAGGGAAGGGAAGTAGAAAAAGCTTTCAGTTTGATCCTTCACTTGAAACTGG
TAAGTCCAGTTCCACTTTGCAGGAATAGGATAGTTTGTGCCAAGAATGCCATCTTGCCACGAAGTCCTCCTTTGTTGAACTGTAGACCTTTCTCATGAAA
ATTCCATAACTTTTGAGCTCACTGAAAACAAATCTGGTAACCCCTACCCCCCCCATATATAGTAGTACTGGTGCCTATGAAAATTGTGTACTGAAATTAA
ATTGCAAAATCTATAGAAATGTCTAAAATGGTTCAAAAATAAGGCATAAACCTCCGAAACCCCCTACTATACCGAAACCGCAACCTACGCCAAAACCTAA
AAAAGAAAAATTAGCATTCGAGATAGGAATTTGAGATTCCAAGTATGCAGAAATCGTGAAACCCAAACTAGCGTACCAAATCCAATCCTGGTTCCGTTGA
AGGAAATAACCATTTCCTTCTTTCTTTCTTTATTTCTTTCTTTCTTTCTAGCTATATGGAGTTAAAGGAAATCACAAAAGAGCGAGTGCGAATTAATTAA
CTAGTCGAGAGTTAAAGGAACTCACTCCGGAACCCTATTTTCCTTTTTTGCTGAGGACTACAACGACAATGACGACATCATTTTGCGCCAGCTCTCGTTC
CTGAGAACTGTTTGGGTTAGCGATGCCACCGTCGAGTCCATGTTGGTGATGGAAGAGTTCAGGAAGCTTCTGTTGCTCTCTGATAGGGCTCTGTTCTTGG
TCGAATTTGAACTCTGGAATTGCGCCACAAAATTAAGTTTCCGGAAGAGGGTTTCGTTGGTCACGGGGAGAAGATTTAGGAATAAT

lncRNA-RNA interactions

Number of interactions: 12

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA02G41700.1 Alpha-form rubisco activase; Uncharacterized protein protein coding CNT0002954 125 62 CDS Trans
GLYMA04G04695.1 Uncharacterized protein protein coding CNT0002954 486 225 CDS Trans
GLYMA04G14470.3 Uncharacterized protein protein coding CNT0002954 428 224 CDS_UTR Trans
GLYMA04G14470.4 Uncharacterized protein protein coding CNT0002954 428 224 CDS_UTR Trans
GLYMA04G14470.5 Uncharacterized protein protein coding CNT0002954 428 224 CDS_UTR Trans
GLYMA04G14470.6 Uncharacterized protein protein coding CNT0002954 428 224 CDS_UTR Trans
GLYMA04G14470.7 Uncharacterized protein protein coding CNT0002954 428 224 CDS_UTR Trans
GLYMA05G04270.1 Uncharacterized protein protein coding CNT0002954 652 316 CDS Trans
GLYMA06G04775.1 Uncharacterized protein protein coding CNT0002954 389 224 CDS Trans
GLYMA06G46620.1 Uncharacterized protein protein coding CNT0002954 379 219 CDS Trans
GLYMA06G46620.2 Uncharacterized protein protein coding CNT0002954 379 219 CDS Trans
GLYMA15G11570.1 Uncharacterized protein protein coding CNT0002954 97 128 CDS Trans