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Detailed information on CNT0002983


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LDT0|CRK30_ARATH, E-value = 3e-26

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0034707, E-value = 4e-06 (P. patens)

Expression of CNT0002983

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MGIGNHMKAGHTFSIIFPKKFRKRANDIYIPFVLNIRPLRSHQSFLVIITV

>peptide 2 (39 aa)
MNETMLSYLVNSSKPTFSEFIRVREVICCNFYCVQVELQ*

>peptide 3 (43 aa)
MLMKMSKATTTRTVGTIMAIVVRSELPFSAKTRIFCSMRHFKD*

Sequence

>CNT0002983
GTAATATTTACCAAATATGAAGTAATCAAGGCTTTTATTTGGAACAAATTCATAAACAAGTAGCTTTTCTTTCCCTTCCAAACTAAAACCAAGTAGCCTA
ACTAAATTTCGGTGCTGAAGCTTGGCCAGTAAAAGGACTTCATTCTTAAATTCCACGCCACCTTGGCCAGAATCGCTTGACAACCTTTTGACAGCAATCA
CTTGTCCATTAGAGAGCCTGCCCTGAAAATATATTACTGTTAGGTATATAATAAATTCTTTGCAATCCAATTTACTGGTATACCATATTTTGATGAAGAG
GTTATATATATATATATATATATATATGAATGAATGAAACAATGTTATCTTACCTGGTAAACAGCTCCAAACCCACCTTCTCCGAGTTTATTAGAGTCAG
AGAAGTTATTTGTTGCAACTTTTATTGTGTCCAAGTTGAATTGCAATGATTCAGCCAATTCAATTTCATCTTCAAATGTGATTCATTATTCAAGCACATT
ATATATTATAGTTAGTGTCGTCAAAATAGACAGAACATCAGGAGATATAACTTCTGAAATCAGAACAAAATGGTCATTGATTTCTCATGATAGATGGCAT
GTCCCTTTAGAAAGATTTTTGTGCCTATCTCTTCGAAATTCATTTTGACAATAGGACTTGGTTGAAAATAGAAAGTATTGATGAATCAAATAATACTTAG
ACCTACCAGCGAGAAGATTTTTCCTTGCTAATTTCCTCCTCCTAAAATATATGCTAATGAAAATGAGCAAAGCAACAACAACGAGAACGGTAGGCACAAT
TATGGCGATTGTAGTTCGCAGTGAGTTGCCCTTTTCTGCAAAAACCAGAATCTTCTGCTCAATGAGACATTTCAAAGATTAAGGATGATAAAATATCAAC
AGTTCTAATAACTAATTATTGGGGAAAAACAGACCATCATAAGAATATATAAGGAAAAAATAAACCCAACAAAGAAGAAAATATTCCATCTCTCGTAGGA
GATTCTTCGAAGTTTATGGATTTCTCATATTAGCAATCTAAATTCGCATATATGGTCATAAAACTAACATTCTTAAATGTTTTTTAATCAAGTTTTCGAG
TAAAATATTCTCATCAAGGGATGGGAATAGGGAACCATATGAAGGCAGGACACACTTTTTCTATAATATTCCCAAAAAAATTTAGGAAAAGGGCAAATGA
TATATATATACCATTTGTTTTAAATATCAGACCACTGCGATCACATCAGTCTTTCTTAGTCATCATAACCGTGAC

lncRNA-RNA interactions

Number of interactions: 27

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA01G01715.1 Uncharacterized protein protein coding CNT0002983 589 441 CDS Trans
GLYMA01G01730.2 Uncharacterized protein protein coding CNT0002983 1768 771 CDS Trans
GLYMA01G01730.2 Uncharacterized protein protein coding CNT0002983 676 250 CDS Trans
GLYMA09G27782.3 Uncharacterized protein protein coding CNT0002983 153 144 CDS Trans
GLYMA09G27850.3 Uncharacterized protein protein coding CNT0002983 127 144 CDS Trans
GLYMA10G39910.1 Uncharacterized protein protein coding CNT0002983 355 242 CDS Trans
GLYMA10G39940.2 Uncharacterized protein protein coding CNT0002983 96 85 CDS Trans
GLYMA10G39940.2 Uncharacterized protein protein coding CNT0002983 431 242 CDS Trans
GLYMA10G39971.1 Uncharacterized protein protein coding CNT0002983 137 117 CDS Trans
GLYMA11G32301.1 Uncharacterized protein protein coding CNT0002983 91 97 CDS Trans
GLYMA11G32301.2 Uncharacterized protein protein coding CNT0002983 91 97 CDS Trans
GLYMA11G32301.3 Uncharacterized protein protein coding CNT0002983 91 97 CDS Trans
GLYMA11G32301.4 Uncharacterized protein protein coding CNT0002983 91 97 CDS Trans
GLYMA12G32460.1 Serine/threonine-protein kinase protein coding CNT0002983 90 119 CDS Trans
GLYMA18G47250.1 Uncharacterized protein protein coding CNT0002983 2878 1085 CDS Cis
GLYMA20G27425.1 Uncharacterized protein protein coding CNT0002983 101 225 CDS Trans
GLYMA20G27440.1 Uncharacterized protein protein coding CNT0002983 475 243 CDS Trans
GLYMA20G27460.1 Uncharacterized protein protein coding CNT0002983 111 99 CDS Trans
GLYMA20G27510.1 Uncharacterized protein protein coding CNT0002983 134 153 CDS Trans
GLYMA20G27510.1 Uncharacterized protein protein coding CNT0002983 438 240 CDS Trans
GLYMA20G27540.1 Uncharacterized protein protein coding CNT0002983 183 151 CDS Trans
GLYMA20G27540.2 Uncharacterized protein protein coding CNT0002983 183 151 CDS Trans
GLYMA20G27560.2 Uncharacterized protein protein coding CNT0002983 178 151 CDS Trans
GLYMA20G27570.2 Uncharacterized protein protein coding CNT0002983 154 151 CDS Trans
GLYMA20G27590.1 Uncharacterized protein protein coding CNT0002983 462 243 CDS Trans
GLYMA20G27660.3 Uncharacterized protein protein coding CNT0002983 137 228 CDS Trans
GLYMA20G27660.4 Uncharacterized protein protein coding CNT0002983 137 228 CDS Trans