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Detailed information on CNT0029868


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P69326|UBIQ_WHEAT, E-value = 6e-43

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005918, E-value = 1e-46 (V. vinifera)
CNT0033455, E-value = 1e-37 (P. patens)
CNT0019050, E-value = 8e-60 (Z. mays)
CNT0000474, E-value = 8e-23 (G. max)
CNT0009867, E-value = 7e-45 (S. tuberosum)
CNT0035798, E-value = 2e-32 (C. reinhardtii)

Expression of CNT0029868

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MSSQRSASARNNHQTDRVRTSTRLRTQQRIKQQTYSNRTYMYSKR*

>peptide 2 (62 aa)
MSKKNYPTDLHQTQNRYNILKPVFAPTHGTNNSIKSGTVDLNMLATRPTRWNTLQIAPITQA*

>peptide 3 (47 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVNVFTKICICKK*

>peptide 4 (35 aa)
MEHATNRTNHSGMTSSTIPQQIYTDFPNRIIQQFI*

Sequence

>CNT0029868
AATATGCAGCATTTTCAAACTTGCAACTCAGATAAAACATCAACAGGAATGAGATGCAAATGAGCAAATTGAGCACATATTTAGGTTCAAATCCAACTTA
TTCATAAAGCATACTGCTGTCCCACAGGAAACTGTTTCATAAAACTAACATATCATACGGACTCGATGGTCCATTAAACCAGACACAAGTAGACATCAGC
ACCACAAATACTTGACGAACAGAGGCTCGGGACGACCAGGCACATCGGCAGCTCCACCAAACTGGCTGATTACTGACCACCACGGAGGCGGAGCACAAGG
TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGC
CCTCCTTATCTTGGATCTTAGCCTTGACATTATCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAGATCTG
CATCTGCAAGAAATAATCACCAAACAGATAGGGTAAGAACTAGCACAAGATTAAGGACACAACAACGGATCAAACAGCAAACATATTCCAACAGAACATA
CATGTATTCAAAAAGATAGTAACAGGCACATCACACATGTATTCAGATAGGTAGTAACAGCACACGTATCCTGAACTTCAGAAATAAGTAGAATGAACTA
GTGGCAATAATCTTCACACAGATAGTAAAAAGAAATTACCACAATAGATTATATAGATGAACTACAGATTGTAACATGATATTACTACAGATTGTAACAT
GATATTCTAATATAGTTCTTAGCATAAATTACTGGCAGATAGTAACATGAGATCATTATGACAGATATAGCGACAAGACTTCCTATTTACCATTGACAAT
TAATTAAAAGAGTTCATCATTATCTAATCTGTGAACATATGAAATCAAATCGAAACGCACAAGCTACATAATTGAACCATGTCTAAGAAGAACTACCCTA
CAGATCTACATCAAACACAAAACAGATATAACATATTAAAGCCTGTGTTTGCACCAACCCATGGCACCAATAACTCAATCAAGAGCGGAACAGTAGATCT
GAACATGCTCGCAACAAGGCCTACAAGATGGAACACGCTACAAATCGCACCAATCACTCAGGCATGACTAGTTCCACAATTCCCCAACAGATCTACACCG
ATTTCCCCAATCGAATCATCCAACAATTCATCTAACCGTAAAAATTCCCCCCAATCATCAGAACCAACATCCAATCCCAAAACCTAACCACGATTCCACC
TATCGAACCAACCGTGCCCAAATCACAACCATCAGATCTACAACCCCTAAACATCTCACGATAATCACATCGACAACCCTAACCACCAATCGGATCTAGC
AACAAAACAACCTCACCCGTCCGAAATCGAATCGAAACGAAGCGAGGAGAGGAGAAGCAGCGTACCTTGAGGACGCGAGAGGATTCGATTCGACGACGAG
AGCCTCGCGAGATTGGGGAGAAATTTTTC

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS02T0161900-01 Os02g0161900 protein; Os06g0681400 protein; Polyubiquitin; Polyubiquitin 6; cDNA clone:J033048M20, full insert sequence protein coding CNT0029868 926 314 CDS Cis
OS02T0161900-01 Os02g0161900 protein; Os06g0681400 protein; Polyubiquitin; Polyubiquitin 6; cDNA clone:J033048M20, full insert sequence protein coding CNT0029868 1368 477 CDS Cis