Detailed information on CNT0029963


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q5ZJC8|MTEF3_CHICK, E-value = 6e-08

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0003348, E-value = 3e-18 (V. vinifera)
CNT0043317, E-value = 7e-19 (A. thaliana)
CNT0032781, E-value = 9e-06 (P. patens)
CNT0000909, E-value = 2e-13 (G. max)
CNT0024091, E-value = 2e-10 (A. trichopoda)
CNT0011703, E-value = 3e-61 (S. tuberosum)

Expression of CNT0029963

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MMTLAPSHNSEAYDQRILGMLNIGSGRNVLQISY*

>peptide 2 (64 aa)
MKKKKKKKKKKKKKKKKKKKKKNKKKKKKKKKKKKKKKKKKRWPSNKAQISKSNGRLTMMNSAR*

>peptide 3 (85 aa)
MYNLAVYDASLAIFAWSTGKCILYSCCGMLMPLCHPEDNALVFDIRKSCSTSTYNMDSLAHHRSRKTDEVHILQYTTKILEANQL*

>peptide 4 (159 aa)
MTSLEAAARPSSRRVAPCDPRGRPRLPPWRLILSPSPSSRRLCTLISRQLPICNAQSYTDNLWLASGNAQSSAAVRSRLLAAEREEAKAVLSLFLRQKGL
RSILAARIANKADGFIEHLVSKLHITYRSRYAEGRELSTPEIRDALIPYLEALSKEHGS*

>peptide 5 (61 aa)
MDKTQGSPAFSLTTDVCQGCVHECAAKRAPPCFPALQRQHRMGVRCTSVLKFQIMKIPTIAN

>peptide 6 (177 aa)
MQAKESKKSRDRGRDRVKWNEENLNDIESTKPVREKITEPKTPYHSMIDEDDGTVSPKRTIEESVDKSTHADAIKTALMEAVSSGKLSAREHLESCSNEE
EEEEEEEEEEEEEEEEEEEEQEEEEEEEEEEEEEEEEEEVAIKQGTDFEEQRKAHYDEFRKMKELRRRGTPSQEGDE*

>peptide 7 (30 aa)
MTISGQLLNTSSQSVRMLRLLFRKAHRLLV*

>peptide 8 (35 aa)
PGCLYPEQSSLFTPLLSHSVSLLLAHRWFRPYSSS*

>peptide 9 (89 aa)
MEVRKSVSILYSKLMLLFMLLITKFANVTLSVVIWCVICANSKQMQIAGNIIYLFSAHFAGHRSEMPTSHSVCEVAKFAFSTRSFCILS*

>peptide 10 (39 aa)
LAVYIQNSHHYSLLSFPILFLFCWLIVGFAHIPLLEGDR*

>peptide 11 (271 aa)
MDHEEIKNVVRKFPAFAYYNVDRKIKPLVALLLELGVPRSNIPGIIKKRPQLCGISLSDNLKPMMTYLENVGINKDKWSKVLSRFPALLTYSRQKVETTV
SFLTELGVPKENIGKILTRCPHIMSYSVNDNLRPTAEYFQSIGADAASLIQKSPQAFGLNIEAKLKPITEFFLERDFTMEEIGTMANRFGIIHTLSMEDN
LLPKYEYFLTMGYPRNELVKFPQYFGYSLEQRIKPRYARMIDCGVRLILNQLLSVSDSRFEDILRKRMDGI*

>peptide 12 (41 aa)
MHLYLISGKVAAPARITWILLHIIEAGKQTKYIFSSIQLKF*

>peptide 13 (39 aa)
MRCKTGSSLFSCASASASHGCSLYFSAEVSDHEDSNNSQP

>peptide 14 (35 aa)
MFARAAFMNALQNGLLLVFLRFSVSIAWVFVVLQC*

>peptide 15 (29 aa)
MKMMGLFLQKELLKNQWISPLMLMRLRLL*

>peptide 16 (55 aa)
WLSISRTVITIHSSPFPFCFSSVGSSLVSPIFLFLKGIADQQGSEVLLTCFHNAS*

Sequence

>CNT0029963
CCTGGCTGTCTATATCCAGAACAGTCATCACTATTCACTCCTCTCCTTTCCCATTCTGTTTCTCTTCTGTTGGCTCATCGTTGGTTTCGCCCATATTCCT
CTTCTTGAAGGGGATCGCTGATCAGCAAGGTTCTGAGGTGCTCCTGACCTGCTTCCACAATGCAAGCTAAAGAATCCAAAAAGTCAAGGGACAGGGGCCG
GGACCGTGTGAAATGGAATGAAGAAAATTTGAATGACATTGAGTCGACCAAGCCAGTAAGAGAAAAAATCACCGAGCCTAAGACGCCATATCACTCAATG
ATTGATGAAGATGATGGGACTGTTTCTCCAAAAAGAACTATTGAAGAATCAGTGGATAAGTCCACTCATGCTGATGCGATTAAGACTGCTTTGATGGAAG
CTGTTTCAAGTGGAAAATTATCAGCAAGAGAACATTTGGAATCCTGTAGTAATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGAACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGTGGCCATCAAACAAGGCACAGAT
TTCGAAGAGCAACGGAAGGCTCACTATGATGAATTCCGCAAGATGAAGGAACTGCGTCGGAGGGGAACGCCGTCACAAGAGGGTGATGAATGATGACTCT
GGCACCGTCGCACAACTCGGAAGCATATGATCAGCGAATCCTCGGCATGTTAAATATTGGCAGTGGCAGGAATGTTTTACAGATATCCTACTAAACCTTA
AAAAGCTCATGTGACTATCTGTTCTCTTGCTTAATTATTAGTACTGGTCCTAGGACAGTACCAGGTAAAATTTTGGCTCTTATTATGGAGGTAAGAAAAT
CTGTATCGATCTTGTACTCAAAACTTATGCTCTTGTTCATGCTGTTGATTACAAAGTTCGCAAATGTGACACTCTCTGTGGTAATCTGGTGTGTAATTTG
TGCAAATTCTAAGCAAATGCAAATTGCTGGGAATATTATCTATTTATTTTCGGCGCACTTTGCTGGGCATCGTTCAGAAATGCCAACGTCCCACTCTGTG
TGCGAGGTAGCAAAATTTGCATTCAGCACCCGCAGTTTCTGCATATTGTCATAACCCCCCTATCTGGACACGGTCACACGAAAATTGGAGTTATTAGAGG
GGTTTATCTGCAAAAGGAACAGGATAAACCTGGCCACTCCCGTTACTCTCGTCGTCGACCTCCTCCCGCTGCTCCCGTTGCGGCGGTCGCCGTCGCCGCC
GACGATGACGAGCTTGGAGGCGGCCGCACGCCCGAGCAGCCGCCGCGTGGCACCGTGCGACCCGCGGGGACGCCCTCGGCTTCCGCCATGGCGGCTCATC
CTTTCCCCCTCCCCTTCCTCCCGCAGGCTTTGCACTCTAATTTCTAGACAACTTCCCATTTGCAATGCACAATCATATACGGATAATCTGTGGTTAGCCA
GTGGTAATGCTCAAAGCTCCGCTGCTGTTCGGTCAAGGTTGCTTGCTGCAGAAAGAGAGGAAGCAAAAGCTGTGCTATCACTATTTTTAAGACAGAAAGG
TTTGAGAAGTATACTGGCTGCACGAATTGCCAATAAGGCAGATGGTTTCATTGAACACCTAGTTTCAAAGCTCCACATTACTTACAGATCACGATATGCT
GAAGGAAGGGAGCTCAGCACACCGGAGATTAGAGATGCTTTGATTCCATATCTGGAAGCCCTTTCTAAAGAACATGGATCATGAAGAGATCAAGAATGTC
GTGCGGAAATTCCCAGCATTTGCATATTACAATGTGGATCGCAAAATAAAACCTCTGGTGGCGCTGCTACTTGAGCTTGGTGTGCCAAGGTCAAACATAC
CAGGAATCATCAAGAAGAGACCTCAGCTATGTGGAATCAGCCTGTCAGATAATCTGAAACCTATGATGACCTATTTGGAAAACGTGGGTATCAACAAAGA
TAAGTGGAGCAAGGTGCTTTCCCGGTTCCCTGCACTTCTCACATATAGCAGGCAGAAGGTGGAGACAACCGTGAGCTTTCTCACTGAACTAGGAGTTCCT
AAGGAAAACATTGGCAAGATTCTGACGCGATGTCCTCATATCATGAGCTACAGTGTCAATGACAATCTCAGGCCAACTGCTGAATACTTCCAGTCAATCG
GTGCGGATGCTGCGTCTCTTATTCAGAAAAGCCCACAGGCTTTTGGTCTGAACATTGAGGCAAAGCTAAAACCGATCACAGAATTTTTCCTGGAGAGAGA
CTTCACCATGGAGGAAATCGGCACTATGGCGAATAGATTTGGGATTATTCACACTCTCAGCATGGAAGATAATCTGCTTCCCAAATATGAATATTTCCTG
ACAATGGGATACCCAAGGAACGAGCTAGTGAAATTTCCACAATACTTCGGGTACAGTTTAGAACAGCGGATAAAGCCTCGGTATGCTCGGATGATTGATT
GCGGAGTGAGGTTGATTTTGAACCAGCTGTTGTCAGTTTCAGATAGCAGATTTGAAGATATTCTACGGAAGAGGATGGATGGAATATGAGATGGTCATAA
TTTCGGATAACCATGGTTTAGGACAATCTCATTTGTAACAAGACTTGATCGCTGCCCTGGTATATAGTTTATCAGAACAAGTAGTGTCCTGGAAATTTGT
ACTTAGCCATGCTTGGCAGCTGACCAATTGTTATTGACAGTTTGATGTATAACTTGGCGGTTTATGATGCTAGTTTAGCTATTTTTGCATGGAGTACTGG
CAAATGCATTTTGTACAGCTGTTGTGGCATGCTAATGCCCCTTTGCCATCCTGAAGATAATGCACTTGTATTTGATATCAGGAAAAGTTGCAGCACCAGC
ACGTATAACATGGATTCTCTTGCACATCATAGAAGCCGGAAAACAGACGAAGTACATATTCTCCAGTATACAACTAAAATTTTAGAAGCTAATCAGCTAT
AAAGAGTAATTAGAGAGTACACTAAAAGCATGCAGTGCACTAGAACTCTGGTTTACATTACGAATATGTAAGTGCTTCGCCATCACTCACCACTCATCAA
GGTTAGTGATAAAATGGATAAAACACAGGGAAGCCCTGCTTTTTCTTTAACAACAGATGTTTGCCAGGGCTGCGTTCATGAATGCGCTGCAAAACGGGCT
CCTCCTTGTTTTCCTGCGCTTCAGCGTCAGCATCGCATGGGTGTTCGTTGTACTTCAGTGCTGAAGTTTCAGATCATGAAGATTCCAACAATAGCCAACC
T