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Detailed information on CNT0030022


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 4e-59

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005918, E-value = 4e-37 (V. vinifera)
CNT0033455, E-value = 3e-41 (P. patens)
CNT0019050, E-value = 4e-71 (Z. mays)
CNT0000474, E-value = 8e-23 (G. max)
CNT0009867, E-value = 1e-64 (S. tuberosum)
CNT0035798, E-value = 1e-27 (C. reinhardtii)

Expression of CNT0030022

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MSSQRSASARNNHQTDRVRTSTRLRTQQRIKQQTYSNRTYMYSKR*

>peptide 2 (35 aa)
MEHATNRTNHSGMTSSTIPQQIYTDFPNRIIQQFI*

>peptide 3 (47 aa)
MRRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVNVFTKICICKK*

>peptide 4 (40 aa)
MVSELSTSKVMVFPVKVFTKICIPPRRRSTRWRVDSFWML*

>peptide 5 (62 aa)
MSKKNYPTDLHQTQNRYNILKPVFAPTHGTNNSIKSGTVDLNMLATRPTRWNTLQIAPITQA*

Sequence

>CNT0030022
GCAAATTGAGCACATATTTAGGTTCAAATCCAACTTATTCATAAAGCATACTGCTGTCCCACAGGAAACTGTTTCATAAAACTAACATATCATACGGACT
CGATGGTCCATTAAACCAGACACAAGTAGACATCAGCACCACAAATACTTGACGAACAGAGGCTCGGGACGACCAGGCACATTATCAATGGTGTCGGAGC
TCTCAACCTCCAAAGTGATGGTCTTCCCAGTCAAGGTCTTCACGAAGATCTGCATACCACCACGGAGACGAAGCACCAGGTGGAGGGTGGACTCCTTCTG
GATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTATCTTGGATCTTA
GCCTTGACATTATCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAATGTCTTCACAAAGATCTGCATCTGCAAGAAATAATCAC
CAAACAGATAGGGTAAGAACTAGCACAAGATTAAGGACACAACAACGGATCAAACAGCAAACATATTCCAACAGAACATACATGTATTCAAAAAGATAGT
AACAGGCACATCACACATGTATTCAGATAGGTAGTAACAGCACACGTATCCTGAACTTCAGAAATAAGTAGAATGAACTAGTGGCAATAATCTTCACACA
GATAGTAAAAAGAAATTACCACAATAGATTATATAGATGAACTACAGATTGTAACATGATATTACTACAGATTGTAACATGATATTCTAATATAGTTCTT
AGCATAAATTACTGGCAGATAGTAACATGAGATCATTATGACAGATATAGCGACAAGACTTCCTATTTACCATTGACAATTAATTAAAAGAGTTCATCAT
TATCTAATCTGTGAACATATGAAATCAAATCGAAACGCACAAGCTACATAATTGAACCATGTCTAAGAAGAACTACCCTACAGATCTACATCAAACACAA
AACAGATATAACATATTAAAGCCTGTGTTTGCACCAACCCATGGCACCAATAACTCAATCAAGAGCGGAACAGTAGATCTGAACATGCTCGCAACAAGGC
CTACAAGATGGAACACGCTACAAATCGCACCAATCACTCAGGCATGACTAGTTCCACAATTCCCCAACAGATCTACACCGATTTCCCCAATCGAATCATC
CAACAATTCATCTAACCGTAAAAATTCCCCCCAATCATCAGAACCAACATCCAATCCCAAAACCTAACCACGATTCCACCTATCGAACCAACCGTGCCCA
AATCACAACCATCAGATCTACAACCCCTAAACATCTCACGATAATCACATCGACAACCCTAACCACCAATCGGATCTAGCAACAAAACAACCTCACCCGT
CCGAAATCGAATCGAAACGAAGCGAGGAGAGGAGAAGCAGCGTACCTTGAGGACGCGAGAGGATTCGATTCGACGACGAGAGCCTCGCGAGATTGGGGAG
AAATTTTTC

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS02T0161900-01 Os02g0161900 protein; Os06g0681400 protein; Polyubiquitin; Polyubiquitin 6; cDNA clone:J033048M20, full insert sequence protein coding CNT0030022 926 314 CDS Cis
OS02T0161900-01 Os02g0161900 protein; Os06g0681400 protein; Polyubiquitin; Polyubiquitin 6; cDNA clone:J033048M20, full insert sequence protein coding CNT0030022 1414 546 CDS Cis