Detailed information on CNT0030105


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0006299, E-value = 4e-07 (V. vinifera)
CNT0023452, E-value = 1e-07 (A. trichopoda)

Expression of CNT0030105

Peptides detected in this lncRNA

>peptide 1 (32 aa)
PFAGVQSEEISSRSLVLRHGSSAKVSEEGLDH*

>peptide 2 (29 aa)
MEQVSVGEMQGGRRRGSRWSVCEMEARTV*

>peptide 3 (47 aa)
MHGWRNGCAYHCTSSRRSVGDQRTCVCVRERERPQRHCTALEVVWSR*

>peptide 4 (40 aa)
MKNRTQAKWQRRVRRKVRKSRGRGGMHVDSDKILCRCSNGS

Sequence

>CNT0030105
ACCTTTTGCGGGCGTCCAAAGCGAAGAAATCAGCAGCCGGAGCTTAGTCCTCCGCCATGGATCTTCGGCGAAGGTAAGTGAGGAGGGGCTCGATCACTGA
GGTAGCAAAACGAGGCCAAGAGAAGGCGAAGGTAAGTAAAACGAGGGATCGATCAACGAAGTAGCAAAACGAAGCCAAGATAGACGGATGCATGGATGGA
GAAATGGCTGTGCTTACCACTGTACTAGTAGTAGGAGGAGCGTCGGTGACCAGAGGACGTGTGTGTGTGTGAGAGAGAGAGAGAGACCTCAGAGGCACTG
CACTGCACTGGAGGTCGTATGGAGCAGGTAAGCGTTGGTGAAATGCAAGGGGGCAGAAGAAGGGGGAGCCGGTGGAGTGTGTGTGAAATGGAAGCTCGAA
CTGTCTGACTCTGTCGAGTAATAAATGCGGCACCGAGGAGGAGGAGATGAAGAACAGAACGCAAGCGAAGTGGCAGAGGAGAGTGAGGAGGAAAGTCAGG
AAAAGTAGAGGAAGAGGAGGAATGCATGTGGATTCGGATAAAATACTGTGCCGCTGCAGCAACGGCTCGT

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS02T0702600-01 Os02g0702600 protein; Putative uncharacterized protein OJ1218_D07.16; Putative uncharacterized protein P0724B10.5; cDNA clone:J033097A05, full insert sequence; cDNA clone:J033115I05, full insert sequence protein coding CNT0030105 946 309 UTR5 Cis