Detailed information on CNT0030194


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q84VA7|BRK1_ORYSJ, E-value = 4e-17

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0043554, E-value = 9e-08 (A. thaliana)
CNT0033201, E-value = 6e-06 (P. patens)
CNT0019995, E-value = 6e-09 (Z. mays)
CNT0000395, E-value = 9e-08 (G. max)
CNT0010524, E-value = 4e-07 (S. tuberosum)
CNT0036613, E-value = 4e-10 (C. reinhardtii)

Expression of CNT0030194

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MDWLLRCSLEPQAPPVSALGCPASHSRTQVCSS*

>peptide 2 (43 aa)
GPASVRLRANVQYSPKKLQFYKGKTPHSNKQAGNIAGLHSTIG*

>peptide 3 (52 aa)
MELSRKEAALHATGTAYRLTHTHTHTHTQTEKHTGTTSPLAPTIQTSKALSF*

>peptide 4 (60 aa)
GRRLSDCVQTCNIPLKSYSFTREKLHIPTSKQATLQVCTQQSVSYLHTNLEHVTIVHGIE*

Sequence

>CNT0030194
GGGCCGGCGTCTGTCCGACTGCGTGCAAACGTGCAATATTCCCCTAAAAAGTTACAGTTTTACAAGGGAAAAACTCCACATTCCAACAAGCAAGCAGGCA
ACATTGCAGGTTTGCACTCAACAATCGGTTAGTTATCTCCACACAAACTTGGAACACGTTACAATTGTACATGGAATTGAGTAGAAAAGAAGCTGCCTTG
CACGCTACTGGCACTGCATACAGATTAACACACACACACACACACACACACACACAGACAGAGAAACACACAGGAACAACCTCTCCTCTTGCACCCACAA
TACAGACATCCAAAGCTCTGTCCTTTTGAACCCATAACACATTGAAAGCACTACTTATGTGCAGACAAGCAGCCCTTAACTGCACTTACTAGTTGAAAAC
GGATGGATTGGTTGTTGCGCTGCTCACTTGAACCTCAAGCACCTCCAGTTTCCGCTCTAGGATGTCCAGCTTCTCATTCAAGGACGCAAGTTTGCTCTTC
GTAGTAGCTTCTG

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS08T0240600-00 Os08g0240600 protein protein coding CNT0030194 98 47 CDS_UTR Trans