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Detailed information on CNT0030302


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005926, E-value = 1e-20 (V. vinifera)
CNT0042553, E-value = 8e-19 (A. thaliana)
CNT0034328, E-value = 2e-22 (P. patens)
CNT0021574, E-value = 2e-22 (Z. mays)
CNT0000126, E-value = 2e-31 (G. max)
CNT0022384, E-value = 8e-19 (A. trichopoda)
CNT0015837, E-value = 3e-18 (S. tuberosum)
CNT0037273, E-value = 1e-17 (C. reinhardtii)

Expression of CNT0030302

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (84 aa)
CVYMNYIYIYIYIYIYIYIYIYIYIYIYIYIYMCVCVCVCVCVCVCVHKPWSMLAGLTLVLLFSILLPHCAHPYSDACTCHACSH

>peptide 2 (62 aa)
CIYELYIYIYIYIYIYIYIYIYIYIYIYIYIYVCVCVCVCVCVCVCTQTVVYAGWPDAGFVV*

Sequence

>CNT0030302
TGTGTATATATGAATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACAAACCGTGGTCTATGCTGGCTGGCCTGACGCTGGTTTTGTTGTTTAGCATCCTCCT
TCCCCATTGTGCCCATCCGTATTCTGACGCCTGCACCTGTCATGCATGTTCCCACAA

lncRNA-RNA interactions

Number of interactions: 45

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS01T0201700-01 Os01g0201700 protein protein coding CNT0030302 166 83 UTR3 Trans
OS01T0201700-01 Os01g0201700 protein protein coding CNT0030302 169 85 UTR3 Trans
OS01T0201700-01 Os01g0201700 protein protein coding CNT0030302 172 87 UTR3 Trans
OS01T0201700-01 Os01g0201700 protein protein coding CNT0030302 174 89 UTR3 Trans
OS01T0201700-01 Os01g0201700 protein protein coding CNT0030302 173 89 UTR3 Trans
OS01T0201700-01 Os01g0201700 protein protein coding CNT0030302 172 89 UTR3 Trans
OS01T0201700-01 Os01g0201700 protein protein coding CNT0030302 177 90 UTR3 Trans
OS01T0773350-01 ncRNA CNT0030302 142 71 noncoding Trans
OS01T0773350-01 ncRNA CNT0030302 142 71 noncoding Trans
OS01T0773350-01 ncRNA CNT0030302 144 72 noncoding Trans
OS01T0773350-01 ncRNA CNT0030302 143 76 noncoding Trans
OS02T0180000-01 Probable protein phosphatase 2C 11 protein coding CNT0030302 168 98 UTR3 Trans
OS02T0180000-01 Probable protein phosphatase 2C 11 protein coding CNT0030302 171 100 UTR3 Trans
OS02T0180000-01 Probable protein phosphatase 2C 11 protein coding CNT0030302 174 102 UTR3 Trans
OS02T0180000-01 Probable protein phosphatase 2C 11 protein coding CNT0030302 177 104 UTR3 Trans
OS02T0180000-01 Probable protein phosphatase 2C 11 protein coding CNT0030302 180 106 UTR3 Trans
OS02T0180000-01 Probable protein phosphatase 2C 11 protein coding CNT0030302 183 108 UTR3 Trans
OS02T0180000-01 Probable protein phosphatase 2C 11 protein coding CNT0030302 186 110 UTR3 Trans
OS02T0180000-01 Probable protein phosphatase 2C 11 protein coding CNT0030302 189 112 UTR3 Trans
OS02T0180000-01 Probable protein phosphatase 2C 11 protein coding CNT0030302 190 113 UTR3 Trans
OS02T0180000-01 Probable protein phosphatase 2C 11 protein coding CNT0030302 189 113 UTR3 Trans
OS02T0180000-01 Probable protein phosphatase 2C 11 protein coding CNT0030302 188 113 UTR3 Trans
OS02T0180000-01 Probable protein phosphatase 2C 11 protein coding CNT0030302 187 113 UTR3 Trans
OS04T0438101-00 OSJNBa0006B20.16 protein; Os04g0438101 protein protein coding CNT0030302 194 126 UTR3 Trans
OS04T0438101-00 OSJNBa0006B20.16 protein; Os04g0438101 protein protein coding CNT0030302 197 126 UTR3 Trans
OS04T0438101-00 OSJNBa0006B20.16 protein; Os04g0438101 protein protein coding CNT0030302 194 128 UTR3 Trans
OS04T0438101-00 OSJNBa0006B20.16 protein; Os04g0438101 protein protein coding CNT0030302 193 124 UTR3 Trans
OS06T0270200-00 Potassium transporter 24 protein coding CNT0030302 192 110 UTR3 Trans
OS06T0270200-00 Potassium transporter 24 protein coding CNT0030302 195 112 UTR3 Trans
OS06T0270200-00 Potassium transporter 24 protein coding CNT0030302 198 114 UTR3 Trans
OS06T0270200-00 Potassium transporter 24 protein coding CNT0030302 199 115 UTR3 Trans
OS06T0270200-00 Potassium transporter 24 protein coding CNT0030302 198 115 UTR3 Trans
OS06T0270200-00 Potassium transporter 24 protein coding CNT0030302 197 115 UTR3 Trans
OS06T0270200-00 Potassium transporter 24 protein coding CNT0030302 196 115 UTR3 Trans
OS07T0691100-01 Pectinesterase protein coding CNT0030302 161 96 UTR3 Trans
OS07T0691100-01 Pectinesterase protein coding CNT0030302 164 98 UTR3 Trans
OS07T0691100-01 Pectinesterase protein coding CNT0030302 167 100 UTR3 Trans
OS07T0691100-01 Pectinesterase protein coding CNT0030302 171 102 UTR3 Trans
OS07T0691100-01 Pectinesterase protein coding CNT0030302 174 104 UTR3 Trans
OS07T0691100-01 Pectinesterase protein coding CNT0030302 177 106 UTR3 Trans
OS07T0691100-01 Pectinesterase protein coding CNT0030302 179 108 UTR3 Trans
OS07T0691100-01 Pectinesterase protein coding CNT0030302 178 108 UTR3 Trans
OS07T0691100-01 Pectinesterase protein coding CNT0030302 177 108 UTR3 Trans
OS07T0691100-01 Pectinesterase protein coding CNT0030302 176 108 UTR3 Trans
OS12T0639800-00 Os12g0639800 protein protein coding CNT0030302 108 54 UTR3 Trans