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Detailed information on CNT0030602


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|B7F7B9|SPSA2_ORYSJ, E-value = 7e-10

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0006508, E-value = 1e-06 (V. vinifera)
CNT0043994, E-value = 6e-09 (A. thaliana)
CNT0002979, E-value = 4e-07 (G. max)

Expression of CNT0030602

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MTKQLSVIKQCQAGKASFLNKPRALLIIPSEQIQHHLSK*

>peptide 2 (28 aa)
MFSSRVFLSCGLRIAFACAAHAHAHRSIH

Sequence

>CNT0030602
CTTATCAATTGTAGTGTAATGACATAGCGGTCACAAGAGTATTCTAAACAACTGAAGCAATAGAAGCAACAAAGCAATCCAGCATTCTCTGCGTGCTGCC
CGCATTTGTTCAGTAACTCGGCTCAATGTCTTCTAAAAGTCTTATCATAGATGACGAAACAACTCTCTGTAATAAAGCAATGCCAAGCAGGCAAAGCATC
CTTCCTAAATAAACCAAGAGCTTTGTTAATTATCCCCTCTGAACAGATCCAGCACCATCTAAGCAAGTAACTATCACATACGCCACACTTTATCAATTCA
TCCATTAGAATCAAAATTACACCGAGTCACTGGCTGAGCTCTCTGCAACCTACGCACACTATCATCATCATCATCATCATCATCATCATCGAAGGGAACG
GAGCGAAGAGCTCACCTCCTTCTTCTTCCTCGCGAGGTTCCAGATCCTCCACGTCATGTTCTCCAGCCGCGTGTTCCTCTCCTGCGGGCTCCGCATCGCG
TTCGCCTGCGCCGCACACGCACACGCACACAGATCGATCCACC

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS02T0184400-01 Probable sucrose-phosphate synthase 2 protein coding CNT0030602 1130 378 CDS Cis
OS02T0184400-02 Probable sucrose-phosphate synthase 2 protein coding CNT0030602 1130 378 CDS Cis
OS02T0184400-03 Probable sucrose-phosphate synthase 2 protein coding CNT0030602 1130 378 CDS Cis