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Detailed information on CNT0030844


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004985, E-value = 1e-19 (V. vinifera)
CNT0042889, E-value = 5e-22 (A. thaliana)
CNT0034678, E-value = 2e-18 (P. patens)
CNT0019000, E-value = 1e-07 (Z. mays)
CNT0002061, E-value = 7e-09 (G. max)
CNT0024131, E-value = 2e-18 (A. trichopoda)
CNT0012080, E-value = 1e-07 (S. tuberosum)
CNT0038582, E-value = 8e-15 (S. moellendorffii)

Expression of CNT0030844

Peptides detected in this lncRNA

>peptide 1 (29 aa)
SRAPAGPEVVHHRGQHPSSHTLLLLHAVS*

>peptide 2 (44 aa)
MQRTPRPGEHKHKSKETKNPLKEAARESSGPARQGSEMGSTNPKL

>peptide 3 (34 aa)
MASRDTSYLSYLHRIAQLIPPTICNSEPKKKNNQ*

Sequence

>CNT0030844
GATCGCGGGCCCCAGCAGGACCTGAAGTAGTCCATCACCGCGGCCAGCATCCTTCATCTCACACTCTCCTCCTCCTCCACGCAGTTTCTTGATGGCATCA
CGAGACACAAGCTATCTCTCTTATCTCCACCGTATTGCTCAACTTATTCCACCTACTATCTGCAATTCAGAGCCAAAAAAAAAAAACAATCAATAAGAAG
TTTGTGCTCGGATTCTTGGAATCTATCGGGCAAGTGCCGCAGATCTGGACAGCTATCAAACCCAGGCACACGAACAGCAAGGATTGTGCCTCAACTGGTG
GCTGCTCTCCGGGATCGAAGAGAATCAAGCAAGAAATTTGTACCCCCAAAAAAAAAATACTTTTTTCCCTATAGCCCTCCTCTCCTTTGCTCTCTCTCAG
TAGCTCTGCCAAATCTTGAAGACTTGTTGAAGAAACAGCTCAGAGGTGTCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCATGCAGAGAACTCCACGCCCAGGTGAGCACAAGCACAAATCCAAGGAGACAAAAAACCCATTAAAAGAAGCAGCAAGAGAGAGCTCAGGGCCAGCAA
GGCAGGGCTCAGAGATGGGCTCTACCAATCCTAAATTGT

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS03T0137200-01 Probable protein phosphatase 2C 28 protein coding CNT0030844 586 198 CDS_UTR Cis
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0030844 143 48 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0030844 149 50 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0030844 155 52 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0030844 160 53 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0030844 160 53 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0030844 160 53 CDS_UTR Trans