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Detailed information on CNT0031085


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0043803, E-value = 1e-11 (A. thaliana)
CNT0032811, E-value = 2e-06 (P. patens)
CNT0019112, E-value = 4e-11 (Z. mays)
CNT0014187, E-value = 2e-10 (S. tuberosum)
CNT0038248, E-value = 1e-05 (S. moellendorffii)
CNT0036890, E-value = 2e-10 (C. reinhardtii)

Expression of CNT0031085

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MAGYQQEEEEEEEEEEETYHGWWRERERDAMDASPSQEEPPPLDRWLACACAVFLSC

>peptide 2 (66 aa)
MQAARTVLSRWPGINRRRRRRRRRRRKHTTGGGGKGRGTPWTPRRRRRSRPRSIAGSLVPVPFSYLA

>peptide 3 (32 aa)
FFFAEVAKGIGRPNFIRMRDGVTNFTRSTLNC*

>peptide 4 (37 aa)
MRGEQLRKRNRLMAGTQPTSLKMLASLQIRISSLISL*

>peptide 5 (30 aa)
MVALHSRYWCIVLTDWTTIHASLELSIPVR*

>peptide 6 (81 aa)
MNNAALAIQSTGKGKCKLQGLCFPDGRVSTGGGGGGGGGGGNIPRVVEGKGEGRHGRLAVAGGAAPARSLARLCLCRFLILR

Sequence

>CNT0031085
TTTTTTTTTGCCGAGGTGGCCAAAGGAATAGGCCGTCCCAATTTTATTAGGATGAGAGATGGTGTTACAAATTTTACAAGATCGACATTAAACTGTTGAG
GCTGGGCCGAGACCCAAGAGCAGAGGGGAGGGGAGAACAACTTTTTTTTTTTGACATGAGGGGAGAACAACTTAGAAAAAGAAACCGCCTTATGGCAGGC
ACTCAGCCGACTTCTCTAAAGATGCTGGCTTCCCTCCAAATCAGGATCTCTTCTCTAATATCTCTGTAAAATATGGTAGCACTGCATTCAAGGTATTGGT
GTATTGTGCTAACTGATTGGACAACTATCCATGCTTCCCTGGAACTTAGCATTCCTGTAAGATAGGGCACCACACACACCCACACACACACACAAAAAAA
AAAAAAAATGATCCCTTCATCGACAGAACAATCCCGGTTGCAAAATGAGCAAGTCCCCTGAGTTATGTGCCTAGCAAATTACTAACCTTTCTGCACAGAA
TCAAGAATGCTGGGTACCATTACCACCTGCCCTTTTCTTGGGAGAGGCTATAAAGACTAACTTCTTGGAACCACAAGAATGCAGAAACCCAACCAAATCG
CTGCCGCCACAAAAGCAATTCCATCCTTATGAACAATGCAGCCCTAGCAATTCAGTCCACGGGAAAGGGAAAATGCAAGCTGCAAGGACTGTGCTTTCCA
GATGGCCGGGTATCAACAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAACATACCACGGGTGGTGGAGGGAAAGGGAGAGGGACGCCATGGACGCC
TCGCCGTCGCAGGAGGAGCCGCCCCCGCTCGATCGCTGGCTCGCTTGTGCCTGTGCCGTTTTCTTATCTTGCGT

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS03T0356300-01 50S ribosomal protein L6, putative, expressed; Os03g0356300 protein; cDNA clone:006-308-D06, full insert sequence protein coding CNT0031085 156 79 CDS_UTR Trans
OS03T0751400-01 50S ribosomal protein L6, putative, expressed; Os03g0751400 protein; Putative chloroplast 50S ribosomal protein L6; Putative ribosomal protein L6; cDNA clone:J023004G24, full insert sequence protein coding CNT0031085 1024 329 CDS_UTR Cis