Detailed information on CNT0031443


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0004985, E-value = 3e-16 (V. vinifera)
CNT0042889, E-value = 5e-18 (A. thaliana)
CNT0034678, E-value = 5e-18 (P. patens)
CNT0019000, E-value = 3e-07 (Z. mays)
CNT0002061, E-value = 7e-08 (G. max)
CNT0024131, E-value = 5e-18 (A. trichopoda)
CNT0011121, E-value = 2e-08 (S. tuberosum)
CNT0038582, E-value = 2e-14 (S. moellendorffii)

Expression of CNT0031443

Peptides detected in this lncRNA

>peptide 1 (103 aa)
WRLGSGNIPCLCAFAPPCLLQLSLSFPPSSSVCVCGVVEWTYAFSLSLSLSLSLSLSLSGSMCAADPAVPLRSGGAMPSYRGGNLKELRSVPLQHPHHSK
PLL*

>peptide 2 (65 aa)
VEIRFWKHTLSVCFCSSMPSSALPLLPSLFLCVRLRSGGVDLCLLSLSLSLSLSLSLSLWFYVCS*

>peptide 3 (58 aa)
MPILHSTQIGRIVTQSNPHPPYYCLPTLLIVELFSSFRSWMHLACHLIKKIIIWKALN*

>peptide 4 (29 aa)
MPSLSLSLSLSLSLSLSLVLCVQLTQLFL*

>peptide 5 (66 aa)
MKSCLLPSSGQYNVIVRIAAHSFGENQNKYLEERIIGPCISDHFDFAAYENILWNQAATPSFCTLV*

>peptide 6 (42 aa)
MVISYLPLKPCHPLNPLVHHPLIFVFLSLALWLKPPSFFHYS*

>peptide 7 (37 aa)
MHTLLIRFAPFVDRTDIAASGCARVRGDHVHLHYKRH*

Sequence

>CNT0031443
GTGGAGATTAGGTTCTGGAAACATACCTTGTCTGTGTGCTTTTGCTCCTCCATGCCTTCTTCAGCTCTCCCTCTCCTTCCCTCCCTCTTCCTCTGTGTGC
GTCTGCGGAGTGGTGGAGTGGACCTATGCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGGTTCTATGTGTGCAGCTGACC
CAGCTGTTCCTCTGAGAAGCGGTGGAGCTATGCCTTCTTATAGAGGCGGCAACTTAAAAGAGTTAAGGTCAGTTCCACTTCAGCATCCCCACCACTCCAA
ACCATTACTTTGAAGCACATGGTAATATCTTATTTGCCTCTTAAACCGTGTCATCCATTAAATCCCTTGGTTCATCATCCATTAATCTTTGTATTCTTGT
CTCTTGCTCTCTGGCTCAAACCTCCCTCTTTTTTTCATTATTCATGAAATCTTGTCTGTTACCATCTAGTGGCCAGTACAATGTCATTGTCCGCATTGCA
GCACACAGTTTTGGTGAAAACCAAAATAAATATCTAGAAGAGAGGATAATTGGTCCGTGCATCTCAGATCATTTCGATTTTGCTGCATATGAAAATATCT
TGTGGAATCAGGCTGCGACGCCCAGCTTTTGTACACTAGTCTAGCAATCAATTCCCATACAGTGACATGTAAGTGAAACTAGTTGGATCAGTGTGTACAT
CCATGCCCATCCTGCATTCTACTCAGATTGGAAGGATAGTGACTCAGAGCAACCCACACCCCCCCTATTATTGCTTGCCAACATTACTAATAGTTGAATT
GTTTTCCTCTTTCAGGTCATGGATGCATCTTGCTTGTCATCTTATCAAAAAGATCATAATCTGGAAGGCTCTGAACTGAAGTAGTTAGTTACAAAGGTAC
GTTACTTAGCCTAGACTAGCTGTGTGCATCACAAAAGCGTGAAGGTGAAGATGAGTCGATGAGATGGAAGTTGTGATTAACGAAAGCAAACCACTTGCAC
GAGGCTCTGATTGAAAATCTGATCTGTATTAGGCGGTGCAGTGACATGCATACGCTACTAATCCGTTTCGCTCCCTTTGTGGATAGGACTGACATTGCAG
CTAGTGGCTGTGCGCGCGTACGTGGGGATCACGTGCATTTGCATTATAAAAGGCATTGAGATCTGGCACGGAAGGAGCGGTCGTTTTCCACGTTGCCGCG
TGCTACACTGATTGGAGCTCGTGATTAATCTGAGACTTGATACGATTGTCTGGATTAATGGGTTTACGTTACTTGAACTGGATTATTCTATAGTCTATAT
GCAACGAGAGAGGTGGTTTGTGTGTTCACTCAAATTAATGAGTCAGCTCATGTGAACTTGCTTTTCACATTAACAAGCGACCCGACGTTGAGAACTGCGT
TTTATTTCACATCAGTGTGCTAAGCTGTTATTGTTCATCATCTTGGCAATTTGCCATTGACTTGTTTGGTTGGTTGCTTAATAGGG

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS03T0582000-02 Expressed protein; Formiminotransferase-cyclodeaminase, putative, expressed protein coding CNT0031443 304 100 CDS_UTR Cis
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0031443 142 50 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0031443 141 48 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0031443 141 48 CDS_UTR Trans