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Detailed information on CNT0031676


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004985, E-value = 1e-18 (V. vinifera)
CNT0042889, E-value = 8e-38 (A. thaliana)
CNT0033726, E-value = 2e-16 (P. patens)
CNT0019000, E-value = 2e-07 (Z. mays)
CNT0002061, E-value = 6e-08 (G. max)
CNT0023953, E-value = 2e-26 (A. trichopoda)
CNT0012080, E-value = 2e-07 (S. tuberosum)
CNT0038582, E-value = 2e-14 (S. moellendorffii)

Expression of CNT0031676

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MVVCSWDILVSSSPFPTPPSPLSLSLSLSLSLSLSLSLPPSLSPSLSLSLSLSL*

>peptide 2 (67 aa)
MQLGYFGEFIPLPHPTLSPLSLSLSLSLSLSLSLPPSLSLSLSLSLSLSLSLNHHLSSLLTYNFTSS*

>peptide 3 (34 aa)
MCSVIGVLVSVCFRVSLLWSRSYFFSYFFQCLVK*

>peptide 4 (30 aa)
MLKLAQELICCKSALQLTLLTFSTINNPQL*

>peptide 5 (52 aa)
MGIFLAEDGQFSENTIYFLSLNVIMSHYSGTCCLDFVACASPLASSLSHTNA*

Sequence

>CNT0031676
CACAAATACAAAAATTTGCAGGTTATTAATTAGTGAACTACATCTCTGTAAATCTGCATAACATATGTTAAAGCTAGCCCAAGAATTAATATGTTGTAAA
TCTGCTCTACAGTTGACACTGCTTACATTTTCTACTATTAATAACCCTCAGTTGTGATAGATCTGATACCTTCTTAAAAATTTGAACTGAGTTTTCATAC
CTAGCAGTAGGACTAACATTTTATGGTTGTATTGTTCAGCTCAAGATGAACAACCACACCAACCCCAAGATCACCAACTAAGCCTATCCTGCTTCATGAT
TGTTGCTGCATACTCCAACATGCTTGCTGCTGGTGCAATCTGAGCCGGCTGGTGGCAGATGGGAGCCTGCCCTATGTTGTTAGCAGCTTTCTTCACTCCA
AGTCATGCTTGCTGCCTGTGGTCTTGGTAGTTTCTTTTTTGTGTTGTCAATTTAATTATTAGGATTTCCCATGTGCTCGGTTATTGGTGTTCTTGTATCT
GTTTGTTTCAGGGTGTCATTACTATGGAGTAGATCATATTTTTTTTCTTATTTTTTCCAATGCCTTGTAAAATAACCAACTAGCAGGGATGTTCATAAAT
TTCCCCCTTTTGTTTGGTTTTTTTCAGACATATATATAATGAAGGCATATATACACAAAAGGAGGAGCTGTTTGAGGGTCTAAAGGACAATAGCTCAATT
GACTGGGAAGTTGTTGTCATATGTCGAGAGCAATCTGCTAAATGTTAAAGAGATCAAAATAGCTCAACATGGGAATTTTTCTAGCAGAGGATGGGCAATT
CTCGGAAAATACTATATATTTCTTGTCGTTGAATGTGATCATGTCCCATTATTCTGGCACTTGCTGCCTTGATTTTGTTGCCTGTGCCAGCCCTTTAGCT
AGCTCTCTATCACACACGAATGCGTGACCCTTGATGGTTGTATGCAGTTGGGATATTTTGGTGAGTTCATCCCCCTTCCCCACCCCACCCTCTCCCCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCTCCCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAAC
CATCATTTATCTTCACTATTGACTTACAATTTCACTTCTAGCTGATGATGATCAATCAAAGCTAGCTCATACGTATTAGTGAGTTTATGAAAAAAAGGAT
CAGATATTCAATAACAGAGTTAGCTCCTTCAGAACGATGGCAAAATGGTA

lncRNA-RNA interactions

Number of interactions: 16

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0031676 167 75 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0031676 155 60 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0031676 161 62 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0031676 163 63 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0031676 163 63 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0031676 157 71 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0031676 171 74 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0031676 146 48 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0031676 150 52 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0031676 154 56 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0031676 152 69 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0031676 150 55 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0031676 161 68 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0031676 142 47 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0031676 146 51 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0031676 146 67 CDS_UTR Trans