« Back to Oryza sativa search


Detailed information on CNT0031800


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004985, E-value = 2e-17 (V. vinifera)
CNT0042889, E-value = 1e-18 (A. thaliana)
CNT0034678, E-value = 2e-16 (P. patens)
CNT0002061, E-value = 6e-08 (G. max)
CNT0024131, E-value = 4e-18 (A. trichopoda)
CNT0012080, E-value = 2e-07 (S. tuberosum)
CNT0038582, E-value = 2e-14 (S. moellendorffii)

Expression of CNT0031800

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MRGGSRCVCNLYFHFDLGGYINIHGFEETVRSDPFSVMIRATWNVDG*

>peptide 2 (35 aa)
FSSLTHSLSLSSKGWPREVVAGRGRWWLGGRSGGG*

>peptide 3 (62 aa)
MERRRMSRSCTLLHHFPILFKLQGHLESSYSSSLPPSPLSLSLSLSLSLSLSLFSSFCTTHC*

Sequence

>CNT0031800
CTTTCTCTTCACTCACTCACTCTCTCTCTCTCTCTAGCAAAGGCTGGCCAAGAGAAGTGGTAGCTGGGCGGGGTCGGTGGTGGCTGGGCGGGAGAAGCGG
CGGCGGCTGAGCGGGAGAAGAAGCATCGGCCGGGCAGGGGAGGTGGCGGCCTCGCCCTCCCCTTCGCCAGATCCGGCAGGAGGGAGGCGGCGGCGGCCGG
GCGGGGGCGGCGGCAGTGAAGTGACAGCGACTCGACCAGAGGAGAATTTGTTTTTTTTAGGATTTGTGGTGAATTTGTTTTTGAGAATTTGTGATGCTTT
TTTTGAATTTGCGATGATTTTTTAAAAATTTATGATGTATTTGATCTATGATTTGGGGATGTAGTGAAATCAATATGCAAGCAGTTAAAAACAATGAAAA
AAAGAAAAAAAAACTTTAGTTCAGGTTGCTAACACCAACCGAGACTAAAAATTTGTGGTCCCGATTATATAACTGGGACTACAGGGGTTACGAACCGTGA
TTGAAGATACTTTCTCCAGTAGTGCTAGTGCCTATTGCCATACGTGATCAACGTGATTAATTCACGATTATTCCTCAAACTAAACATGCAATGATCAGAA
GCACCAATAGTTTCCATCTTTTGTGGATCTCCCTCGATCTTCCATAGCGCAAAATTAAAAAGAGAGTCCGGCCGTGAAACGGGACACTGTTTTTATGATG
TTCATTCCAATGTTCCAACCTTGATAAATAAGACGCTGGAGGGAGAACGTGTGGCACTTCTAGAGCAGTGCAGGTGACGATCAGAAGGACACCGCTACCC
CGCTGACTGCCGACAATCTATCTAGACTCAAGCTAGCGATGCCAATTGTTCTTCTACACAGACAATATGAGAGGTGGTTCAAGGTGCGTCTGCAACCTCT
ACTTCCACTTTGATTTAGGAGGCTACATCAACATCCATGGCTTCGAGGAAACGGTCCGATCTGATCCATTCTCTGTGATGATACGTGCAACATGGAACGT
AGACGGATGAGCAGAAGCTGCACGCTACTACACCATTTCCCTATCCTTTTCAAACTTCAAGGACATCTTGAATCTTCTTATTCTTCTTCCCTCCCTCCCT
CCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTTCTTTTTGCACAACCCATTGTTAATTTGAAATTGAATACTGTAA
TACTCAATTTGTTTTGGAAATTAATTTGTACTACCGTACCGAAC

lncRNA-RNA interactions

Number of interactions: 7

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0031800 149 61 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0031800 143 48 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0031800 149 50 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0031800 149 60 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0031800 145 49 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0031800 145 59 CDS_UTR Trans
OS09T0427125-00 Putative uncharacterized protein protein coding CNT0031800 145 49 CDS_UTR Trans