Detailed information on CNT0031845


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0007384, E-value = 7e-06 (V. vinifera)
CNT0034354, E-value = 7e-06 (P. patens)
CNT0021508, E-value = 5e-07 (Z. mays)
CNT0022396, E-value = 5e-07 (A. trichopoda)

Expression of CNT0031845

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MHAPGREKNNGVLEKNRLIQKITASNLLVCAPNGTINILSKGRRTSNLKTFFSPQR*

>peptide 2 (73 aa)
RVIRFSPFILETTFVTRCRQCEQPMLALITTTCTCSFQFHFTQLIPLAASINTINSSLSSSVFALLLSNQEVN*

>peptide 3 (36 aa)
MLQSMDSDRTVEREGEKQQVEVILCSKYFFMILFLE*

>peptide 4 (31 aa)
MKRSLICTDQYKIRARQHVHVVKIYVAVTGI*

>peptide 5 (86 aa)
MREREREREELTEGRERSSTSLKACSLVAAPFLVASDSLVILLHRLALSSSSPPFSMLGFNSLGVEKSGASLLSEWELRKASLFILV

>peptide 6 (38 aa)
MMDERERERERGAYRREGEVLDEPQSLQLGRCTILGCI*

Sequence

>CNT0031845
AGGGTTATTAGATTCTCACCGTTCATCTTGGAGACAACCTTTGTGACCCGCTGTCGGCAGTGCGAACAGCCCATGTTGGCGCTCATCACCACCACCTGCA
CCTGCAGTTTTCAGTTCCATTTCACACAATTAATCCCACTAGCAGCCTCCATAAATACCATCAATTCTTCATTATCATCTTCTGTATTTGCATTGCTTCT
AAGTAATCAGGAAGTTAATTAAGGGACCACTCTGCAATAATCAGCTATGTATAACCACTTATTGATCTACTAATTAATTAAATTATACCACTACTTTATT
AGTGGGTTAGGCTGGTCTTACACTATCACTGTTGATGAGACTCACTAATTAAAAGACTAGTTAGAGCGACTACGTGTTGCCAATGGATACATGTGTGGTC
TCACTCTCACTTAACCATTAATCTCCATCTTTCGCTAATTGGCACCTTGACAATATGAAGGTGGTCCTCTCCTGTCCTCTAAAAACCACATGAGAGCCAC
TATTGACCTGCATTGTTAAATTCCTCATCTGTTCTTGTTCAGTTTGCTATGGGCATACATACAGTTTTAAATTTCTGTCCCTGCTTCTATGGGATGCATG
CATAAATACTACATGCCTACATGATATGCTAATATAATTAATCCGAGCACATTGCACATAGATTATTATGTAGTACTTGTGCATCACGTGTAGTCCCTAC
TCTACCGTTGTGATCATCAGTCTGCAGGCTTAATTACCTGCATGGTGGGCAACAGCATGTGGCCTCTCATACCCTATGGTCGGGTGGCCAAAATCATTGA
CATCCATAGATAGCTAGTCGAGGCAGCAAGTAATTAATTTATTTACTAATCCGATGGGAATCTTACTAATATATTTCTTCTTAGCTGTAATCTAAGGGTG
TACGACATCCATGCCAAGCAATTCCAGTATTCTACCTATATAAGTAGTAAAATACATGAGGTTGGAAATGTGAACTTCTCTACTGTAAAAAGAAATAGTA
AAAATGCAGGAACTAATACACGTATAGATAAAGATTGGTCAGAGCTGTACACTCTGGCTTAGCTATGAAACGGTCACTAATTTGCACGGACCAGTATAAA
ATCCGTGCACGTCAGCACGTGCATGTGGTCAAAATATACGTAGCTGTTACTGGCATTTAGCATGTTAATTATTACGATAACGATGGATGAATGGATGAAA
TGGATGTATTGCCTATAATTATTAGTTAATTCCGTATACATGTACTCTAGGTCAAATAAAACGTATTGTGCCACATGTGCCGAATTTGACTAGAGATACA
GAGTACGTATGTGAGAATAGATCTTTTCTTAATGTAAATATAAGTACAGCTGTACGCACGCATGAAGAAAGACAGACTAAGTATTTTTGCTATGCCAATG
GATGCTACAATCGATGGATTCTGATCGGACGGTCGAAAGAGAAGGTGAAAAACAACAGGTAGAAGTTATTCTTTGTTCTAAATATTTCTTTATGATTCTT
TTTCTAGAGTAAACGGCTCCATCCCTTGTGAGGATAGGAGACCACGTGACTGCCAGGTACTTGGTCAAAAAAACTCAGAAAAATTCAGGCTTTGTTTTGC
ACTGCATCCCATTACCAAGAGACAGCCATTTAGATGTAGATAGTTAATTAGAAAATGGATTTAATTAATGAGATCATTCTTTTTTTTTTGAGGGGTTAAT
GAGATCATTCTGATCTCAGCAGTTTTGTTCCTGCTCCTAGCTAGAAGAAAACTCTGTAGCTACTGCAGTGCAATTGTTTGGTTGATTGATAGTCCCTTTT
TAACCTTTAGGCTAAAAGCCTGAAAGTTGAGAGGTACTAAAAAGTGACTGAGAAATAGGGGCCCAGTATCCGAGGAGATAAACTATGGTCGTCACTCATC
ACACACATCTCAATGTGCAGGGGACACAGGATGTAATGGCAAGACAAAAGGCAGTAAACAACAGCTGACATTGGAGGTGCTGATGCATTGAGAAAGGGAA
AGAGATTCTGGTAGGAATTCTGTCATTGCCTATTGCTATGCATGCATGCACCAGGGAGGGAGAAGAACAATGGGGTTCTGGAAAAGAATCGACTGATTCA
GAAAATTACTGCTAGTAATCTACTGGTCTGTGCACCTAATGGAACAATTAACATCCTAAGCAAAGGGAGGAGAACATCAAACTTAAAAACTTTTTTTTCA
CCACAACGATAGAGACTTCTGGGTTTTGTAGAACTAGAAGCAGAAGAAGCATTAGAGCTTTTAGATGGAAAAAATGGAGACATGATGGATGAGAGAGAGA
GAGAGAGAGAGAGAGGAGCTTACAGAAGGGAGGGAGAGGTCCTCGACGAGCCTCAAAGCTTGCAGCTTGGTCGCTGCACCATTCTTGGTTGCATCTGATT
CTCTGGTAATCCTCTTGCATCGGCTTGCTCTGTCATCTTCTTCCCCTCCATTCTCCATGCTTGGCTTCAATTCTCTTGGGGTGGAGAAGAGTGGAGCTTC
TCTCTTGTCTGAATGGGAGTTGAGAAAAGCTTCGCTTTTTATACTTGTC

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
OS01T0927300-01 Os01g0927300 protein; Putative uncharacterized protein OSJNBa0093F16.28; Uncharacterized protein; cDNA clone:J033021C11, full insert sequence protein coding CNT0031845 1260 436 CDS_UTR Cis
OS01T0927300-01 Os01g0927300 protein; Putative uncharacterized protein OSJNBa0093F16.28; Uncharacterized protein; cDNA clone:J033021C11, full insert sequence protein coding CNT0031845 982 351 CDS Cis