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Detailed information on CNT0033155


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9LS54|VQ20_ARATH, E-value = 1e-12

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004738, E-value = 1e-06 (V. vinifera)
CNT0043837, E-value = 5e-06 (A. thaliana)
CNT0017680, E-value = 5e-06 (Z. mays)
CNT0002061, E-value = 5e-06 (G. max)
CNT0022351, E-value = 8e-08 (A. trichopoda)
CNT0031808, E-value = 2e-08 (O. sativa)
CNT0012080, E-value = 5e-06 (S. tuberosum)
CNT0039778, E-value = 5e-06 (S. moellendorffii)

Expression of CNT0033155

Peptides detected in this lncRNA

>peptide 1 (92 aa)
MILAGARVFLVRGLLKSQPGITGTCEFLDKRHEVIRLGVDHLWRIRMNNDRGTVLYLREWRRRLPDPVRILAYFQRRVTTAIHLLPQPKPKP*

>peptide 2 (55 aa)
MSDYPSQSWYTLLKPKASCLSVGSPPSRDRYTTKNFEALARNLCYKAPASEASQI*

>peptide 3 (33 aa)
MGSLLSNSKGESKGLLGELDCLIPTSPSQESET*

>peptide 4 (30 aa)
MKVWMFSRATMFPSDDAEYAPAYCWSGRWR*

>peptide 5 (55 aa)
CACKRVYFRSVACCNCNRKRDYVTTRDVTRHLEEDPSLNTLSLFLFGRILISTSR*

>peptide 6 (42 aa)
MRRRTDVKSKWRGGGMEGRNEGRAKLGHQKQLVGDEGGSGFNG

Sequence

>CNT0033155
TATGTGCTTGCAAAAGAGTGTACTTCCGGTCAGTGGCATGCTGTAATTGCAATCGTAAACGTGATTATGTTACAACACGAGATGTGACCCGCCATCTTGA
AGAAGACCCATCTCTGAATACCCTATCTCTCTTTCTGTTTGGACGTATCCTTATCTCAACGTCGAGATGAGCCCAACTCTACCCTGATAACGAAACACTT
GGCATCGTCGTGTAGACCTCTACACTCCCGGTCAAAAACTAAGTTGTAAACTTGTCGTTGACGTGACGCTCCCGCTACAAGCAACACATAACTTCCGCGC
TGAAGTCCAATAACTACCTACCCGTGTCAATGTTGGTTAGTATCCTAACCTTCTGTGCCTACAATGTACAGGGCTCTACAAGCTGATGTCGGACTACCCC
TCACAGTCATGGTACACTCTTCTAAAACCTAAAGCATCATGTTTATCCGTTGGCTCCCCTCCTTCAAGAGATAGATACACCACCAAAAATTTTGAGGCAT
TGGCACGAAACCTCTGTTACAAAGCGCCAGCCTCCGAAGCATCGCAGATATAACGAATTCAAACTTGAGATTATGTCATCATGAAGGTGTGGATGTTCTC
CAGAGCAACCATGTTTCCCTCCGACGACGCAGAGTATGCTCCAGCGTATTGTTGGAGTGGGCGCTGGCGTTGATACGGCGCCTGTAGCCCGAAGTAGCCC
GAGTGAACGGGGCTAGAAGGGAAATCAAACGGAGAGAACATGGGGTCGCTGTTGTCGAATTCGAAGGGAGAGTCTAAGGGACTCCTTGGCGAGTTGGACT
GCTTGATACCTACCTCACCTTCGCAAGAATCAGAGACTTGAACAGCAGATTCATCAGAGACTGAGGACGAGCCACAGTTGGTAGTAGTTGACGATCCTGA
CCCTGAACTCGCAACAAGATCAACAAAATCCTCAGTTAGAACCGATTCCTTCCAAGTGAGACTTACTGACCTGAATTGGCGTGCACTTAATGAAACAAAC
AAAGGATAGTAGAGCTAGTGCACACCTTGTCGCTCGAGACTAGCTGAATCTGTGGACTGTACTCCGCCACAAGGTTCACAAGATTTATGATCCTTGCGGG
TGCCAGAGTTTTCCTTGTTAGAGGTCTTCTTAAATCGCAACCTGGTATCACTGGAACCTGTGAGTTTCTGGACAAGCGACATGAAGTCATCCGGCTGGGT
GTGGATCACCTTTGGCGAATACGTATGAATAATGATCGGGGGACGGTACTGTATCTGCGGGAGTGGCGACGGCGGCTTCCTGATCCGGTGAGAATCCTTG
CTTACTTTCAACGAAGGGTTACTACTGCCATTCACCTGCTTCCTCAACCCAAACCGAAACCCTGAGTCCTTCATAGAAAGAGCCACCTTTTCGGCCAAAT
CGTTCTCTGTCTTGGCGACAGTGCTGCGCACCGAGGTTGGCGGACTCATCCTGGGCTACTCTTACTACTACCACTACTCTCTCTCTCTCTCTCTCTCTCT
CTCCTTCAATGCACACTTGATCCCCACCCGTGAAACTCGTCACACGCTGTTATTGCAGACGGACACTCCACATTATCGCCTCGGCGCCCTGCTTCCGACA
GTCGCAAACTAAATTTGAAAATAAACAGTCTAGAGAACACTGCATGCACAAGCGCAAAAGAACTAGATAAAGGGGGGGGGGGTGTTTGGCAACTTAAATG
CGCAGGAGGACTGACGTAAAGAGCAAATGGAGAGGAGGAGGGATGGAGGGAAGGAATGAAGGAAGAGCGAAACTGGGACATCAAAAGCAATTGGTTGGTG
ATGAGGGAGGGAGTGGTTTTAATGGAA

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
PP1S310_23V6.1 Predicted protein protein coding CNT0033155 3318 1110 CDS_UTR Cis