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Detailed information on CNT0033455


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P69317|UBIQ_LUPPO, E-value = 1e-44

BLAST vs NONCODE (A. thaliana): nothing found

Potentially orthologous lncRNAs:
CNT0035799 in C. reinhardtii

Most similar lncRNAs:
CNT0005917, E-value = 1e-23 (V. vinifera)
CNT0019050, E-value = 7e-25 (Z. mays)
CNT0000474, E-value = 1e-10 (G. max)
CNT0028472, E-value = 1e-47 (O. sativa)
CNT0009867, E-value = 3e-39 (S. tuberosum)
CNT0035799, E-value = 4e-26 (C. reinhardtii)

Expression of CNT0033455

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MVLPVRVFTKICILKQVLTNSTTISVYKTLENRS*

>peptide 2 (29 aa)
MLMLQNQQRPVMFRNGSKITDESEQAYQP*

Sequence

>CNT0033455
GGGTACTTGACTCATTACGACCAACAGATTACAAAATAAGTACCACAATTGACAAACTCAGTCAGTCTCACAGTTCGCATTAAACATAACTGTGCATTTT
TATATAAGATAAATAAATTATGTTAATGCTACAAAACCAACAGAGGCCTGTCATGTTTCGTAATGGAAGTAAAATAACGGATGAGAGTGAGCAAGCCTAT
CAACCGTAATAGTGATTGAAATGCACAACATACAGCTCGTGTCTAAAGCAAGAAATAGGAGGGAGACAAATTTAAAGAACCTTATGTAAGATACAATGAA
GTCACCTGTTTACTGAACGGTAGCATTTGCCACAAAATATGAACAGTCAGAACATTTCAGTTCTTCACGGGAACAATTCTGGGGAAGCACTCTAGAGCAG
GAAAGACAATGAACATTCAAAATCCTCCTCGAAGGCGCAGCACCAGGTGCAGTGTTGACTCCTTCTGGATGTTGTAATCAGCAAGAGTGCGACCATCCTC
CAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGAGGAATCCCTTCCTTGTCCTGGATCTTAGTCTTCACATTATCGATAGTATCCGAGCTCTCG
ACCTCCAAGGTGATGGTCTTACCGGTCAGGGTCTTCACAAAAATCTGCATCTTAAAACAAGTTCTCACAAACTCTACTACAATTTCTGTATACAAGACAC
TGGAAAACCGATCCTAAAGCACAGAAACACGCCTTCAATAACCGGAAAAAGAGGCCGAATGGAGAGAAGTACCA

lncRNA-RNA interactions

Number of interactions: 10

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
PP1S175_73V6.2 Predicted protein protein coding CNT0033455 344 212 CDS Trans
PP1S175_73V6.2 Predicted protein protein coding CNT0033455 410 227 CDS Trans
PP1S227_93V6.1 protein coding CNT0033455 425 218 CDS Cis
PP1S227_93V6.1 protein coding CNT0033455 836 339 CDS Cis
PP1S227_93V6.1 protein coding CNT0033455 899 352 CDS_UTR Cis
PP1S227_93V6.2 protein coding CNT0033455 899 352 CDS_UTR Cis
PP1S46_189V6.2 Predicted protein protein coding CNT0033455 395 228 CDS Trans
PP1S46_189V6.2 Predicted protein protein coding CNT0033455 478 238 CDS_UTR Trans
PP1S46_189V6.3 Predicted protein protein coding CNT0033455 425 227 CDS Trans
PP1S46_189V6.3 Predicted protein protein coding CNT0033455 379 228 CDS Trans