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Detailed information on CNT0003348


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9FM03|DOF56_ARATH, E-value = 2e-30

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0043317, E-value = 9e-18 (A. thaliana)
CNT0032781, E-value = 7e-06 (P. patens)
CNT0000909, E-value = 5e-10 (G. max)
CNT0024020, E-value = 5e-10 (A. trichopoda)
CNT0029963, E-value = 2e-18 (O. sativa)
CNT0011703, E-value = 2e-18 (S. tuberosum)

Expression of CNT0003348

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MNTHITETSQIHAALSTRSNPMPPCVIKQTR*

>peptide 2 (140 aa)
MQVLKTTELRGVSVFGLRLGPTCPSLGLENGHRVENNGDGYLVHADSLPPTHTTKPGFHSENKQTKIKKQIFLNLNTISSDLQHHSLHPLRSIKDLRAGW
GIGEGKQKKKKKNLTCLFIYLILLQLHKGKRERRCTGYCT*

>peptide 3 (54 aa)
MRQPGCARLSLVVTVAVTPPCPLLNFEPFIFLHSPNFLQFTFYFNLGVRLVCLY*

>peptide 4 (45 aa)
MDTGSKTTAMVTLCMQIRSHLPTPQNQVSTLKTSKPKLRSKYFSI*

>peptide 5 (79 aa)
MLNSAAAAARPKRVAWRSSMGGGGCVRPQQYPFPLSLFVLSLFSHPTFMSLSPESSILLFLSLLLSSPDIISAIWPPLP*

Sequence

>CNT0003348
CTCAAACATATAACTTTAATCAAAAGTTCAAAACAACCTAACCCAACACATAAAATCTCTATAAGAAGATAAGAACAAAGGGTGTTGCCGCTATTCCCCC
ATTTACATGAATACCCACATAACAGAAACCTCTCAAATTCACGCTGCTTTATCAACCAGATCAAACCCTATGCCACCCTGTGTAATCAAGCAAACCAGGT
AAAGGTGCAGGTACTCAATAGTTATGTGTGTAAAAAAAAGAAGAAGAAAAAAGTCCAGAAAATTATGCTGTCTGTTGGCTAGCTAGAGCTCGAGAGATTG
ACAAGGCTGAAGAATATCATGGAGGAGGGCCATATCCCTGCAGATCAGCCCAGTGATTTTGATTGAAGGACGAGCTAGCGGCGTTGCTGTTGTTGTTGCT
GCTACCGCCGATACTCCAAAGGTTGGAGTCTGGAGCGGTAGGGTTGATGAAAGTCTGATGCCAATTATTCTGATGTCCAGTAGGCCTGCTTGATTGAATC
AAGTCTTCTCCAGAACCATACAAGCTTTCTATGTTCCTGTCTCTATTACCCATCTGGTAGAATTCTGCCTGCTGACGCTGCTGCTGTTGTGAACCCAAAG
AAGGAACATTGAATCCCTGTAAAATAGCCAAATTAGAACCTCCAAAATCGCGACCCACGTTGACTGGTTGATTGAAGGGCTGTGGCTGTGGCTGGTTGAG
AGGACGCATCGCTGGTAAAGAGGATAAGAAAGCCCCAGCAGGATAGTAAGGGTTGACAGAAGAAAGCGTCGGTGCAGATGCAGGTGCTGGTGCCGGAGAT
AAGTTGGCTGGTTCTGCAATCCTCAGAGCTGGCCCCACGGCTACACCAGAATTTGTAGATATGATGTTTGGCGGCGGTGCGGCTAAATTTTGTTGCTGTT
GTTGGGTTGGTAACTGAGAGCGCGAATTGTCGCCAGAAGCGGATGGTTTGCGCTTAGTCTTCCGGCAACCACCGCCGACGGGGACGTTCCTTAGAGTTCC
ACCTTGAGTCCAGTACCTTCGACAAGTTTTGCAGAAGTAGCGAGGCTGAGAAAGGCTGTAATTGTTGTAATAGCAGAACTTGGTGTTGATAGAATCACAT
CGAGGACATTTCTGAGGTAGCTGCTGCTGTTGATTCTCGGATTGCGCTGGCTTCAATCGCCGATCTGGAGGATCCACGTCTTCCAATCCTCCTCCTTTAT
CTCTATCTTGCTGCATCTCTCTCCCTCTCTCGAACTGGTCTATCTTGTTTCTAGTTTGGGTTTCTTCACCTCTTCTACCCTTTATAATGGTGCATGCAGG
TTCTGAAAACTACTGAATTGCGAGGCGTTTCAGTTTTTGGTTTGCGTCTGGGACCAACGTGTCCCTCTCTAGGTTTGGAGAATGGACACAGGGTCGAAAA
CAACGGCGATGGTTACCTTGTGCATGCAGATTCGCTCCCACCTACCCACACCACAAAACCAGGTTTCCACTCTGAAAACAAGCAAACCAAAATTAAGAAG
CAAATATTTCTCAATCTAAACACAATCTCTTCAGATCTTCAGCACCACTCCCTACATCCTCTCCGCTCTATTAAGGATTTAAGAGCAGGTTGGGGAATAG
GAGAGGGAAAACAAAAAAAGAAAAAAAAAAATCTCACCTGCTTATTTATTTATTTAATTCTTCTGCAACTTCATAAGGGAAAGAGGGAGAGGAGGTGTAC
GGGTTATTGCACGTAGACAAAGTCCACAAAGGAGAGGTCTCAATCCGGGGAAGAGATTTCGGGGAAACCAGTTCAGTGAAAGTACAGTGACCATAAAGAA
ATGGGCTTGTTTAGGTTCCGTCCCATCTCACCAACCCAGAGGATAATGGGAGAATAAACAACTGAAACCCCAGTTCATTTCTTCCGTCAGACGACCCAGA
CGACCCCTCCTATACGTGAAATAGCCAATACACCAATCAATTCACCCACCCCACTTCGGAATTCACACGATTCGACTGATCATATCATCATTCCAAAGAA
TCACCAACAGAAACAGAAAATTGAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAGGGGGAAGGGAGGGGAAAGAAAAACGAAG
GAGCAAAAGTGAAGGACCAACAGGGAGATGCTGAATTCAGCGGCGGCGGCAGCGCGGCCCAAGAGGGTGGCGTGGCGGTCGTCAATGGGTGGTGGTGGCT
GTGTCAGACCTCAGCAATACCCTTTCCCCCTCTCTCTGTTTGTCCTCTCTCTCTTCTCTCATCCCACTTTCATGTCTCTCTCTCCTGAGTCTTCTATTCT
ATTATTTCTTTCTCTTCTCCTCTCTTCTCCTGACATCATTTCTGCCATTTGGCCGCCCCTTCCTTGATATCGCCAACGTCCGTTTTTTCCGAAAGGACCA
TCCTGCCCCCCTCTGCACTCGTTTCTCACACCCAACTCGCTCCTATCATCCTATGCGCCAGCCAGGCTGTGCCAGATTAAGCCTGGTTGTAACTGTAGCT
GTAACACCCCCTTGTCCCCTTTTGAATTTTGAACCCTTTATTTTTCTTCACTCTCCCAATTTCCTTCAATTCACCTTCTATTTCAATTTGGGTGTCAGGC
TTGTCTGTTTGTATTAAAGCTCCATTTAATGTGCCCAT