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Detailed information on CNT0033545


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q8L765|BPM1_ARATH, E-value = 1e-36

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005582, E-value = 3e-13 (V. vinifera)
CNT0042563, E-value = 1e-09 (A. thaliana)
CNT0019093, E-value = 1e-06 (Z. mays)
CNT0002977, E-value = 4e-06 (G. max)
CNT0023377, E-value = 4e-06 (A. trichopoda)
CNT0032380, E-value = 2e-20 (O. sativa)
CNT0015837, E-value = 1e-15 (S. tuberosum)
CNT0037273, E-value = 3e-07 (C. reinhardtii)

Expression of CNT0033545

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MKNEPYSDACEILAHLIPIVKYLLILNRRHYLPMCQAIKFHN*

>peptide 2 (41 aa)
MKVLQVEGTEKCIYRRLTPGLKAPQLSGPRRRTETKPRTYM*

>peptide 3 (29 aa)
LGNVIWKCEILVLAPKSESTVQRDSQLFI*

Sequence

>CNT0033545
AACTTGGAAACGTTATTTGGAAGTGTGAGATCCTGGTGTTAGCTCCCAAATCTGAGTCCACAGTGCAAAGAGACTCTCAATTGTTCATATGAAAAACGAG
CCATACTCGGATGCATGTGAGATACTTGCTCACTTAATCCCTATTGTAAAGTATCTTCTGATCTTGAATAGGAGACATTACCTCCCTATGTGCCAGGCGA
TAAAATTTCACAACTGACTAGGAGGACAAAATAAAGACCATACCGACAGATACCCTCAAGATCCTCGCCTAGTTCCAAAGATCATTCCACATAGAATGAT
TAGTTCTCTCGTCCCATGGCACTTCAGATGAAGTAAATCGTGGACTCAGGGAATACCAGGGTAGTCCCGTATAATCGTTGACCAGAGTGCACACTAAGTT
CTGGGTCTAACCCTCCTACCGCCGGCATCAGCACCGTCAGACATTTGACCCCATACACTACGATTCCGATTGGAAATTACACCTGTACCGACGCCTTCTT
CGTAAACACCAGCTACTGTTTTCAACAGCTCCGACTGCAACGTGGGACAACTATCCCGGAGGTATTCGAACCCCTCCGAGTGCATCACAGCAGCAAGGTT
TGAGGCTGCAAACTTCAAACAAACAGCCTTTAACTCTGCGGCATGGTGCTGCTCGGCAAGAGCAAGAGTCGTCGCCACTGTGTCTACACTGACATTCTCG
CACAGCTTGGACTCGCATAGTAGCCTAAGTCGATCGAGGCCATACCTATCCGCTGCAGCTAAAAGGTGCTGAGCTAACAGAATAGATGTTGAGGGTGCTC
GAATAAGCTCTTTCGTATCAGGTAAAGAATCCCGATAGATGAAATGTAGCAGAGCTTTAAAGACCTGCAAGAATACACACAATTAGAATATACTCTGCAA
ATCATAGTCAGTACTTCACAATAAGATCCAAGCTGCTTAACTGTAGAAGTAAAGAATTCTAAAACCACTTCCTCAATTCAAGGGAAAGGAAGAAAACGCA
ACTTACCTCTCTGCTATATATATATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTAATTAAAAGGATATGAACGATTCGTACATGTACTG
TTAACTCAAAACCGATTGACTATGAGATGAAAATGTCTCGAATCAACCTAAACATTCTCTCGCGTACATTAGCAATTGCCAGCTGTAGGCCACAAGATTG
TAAATCAACATAATATCTTGCAGGAAGCTTAAGCCACCACCAGATAACATTAAGGATGAAAGTTCTACAAGTGGAGGGCACAGAAAAATGTATATACAGA
AGACTTACGCCAGGTTTGAAGGCCCCGCAATTATCAGGACCTAGGCGTCGAACAGAGACAAAGCCACGAACCTACATGTGACACAAAAGCATGGACTAAA
ACAAACATGAATTGTGGATGTGAGACACCTTACCACTTGAAGAACTAAAAAAAGCCCAAATTGTAAGTGTGAACACTTACAGGGGGTTCGACATCTTCGA
TTTCGATATTGCCACTATTGCGATCTCGCATGGGCCCAAACAATTGAGCTTTAAATACAGGCGACCGGGCCG

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
PP1S148_71V6.1 Predicted protein protein coding CNT0033545 960 506 CDS_UTR Trans
PP1S205_22V6.1 Predicted protein protein coding CNT0033545 2488 846 CDS_UTR Cis
PP1S205_22V6.1 Predicted protein protein coding CNT0033545 3156 1096 CDS_UTR Cis
PP1S205_22V6.1 Predicted protein protein coding CNT0033545 988 342 CDS Cis
PP1S349_1V6.1 Predicted protein protein coding CNT0033545 1340 862 CDS_UTR Trans
PP1S349_1V6.1 Predicted protein protein coding CNT0033545 231 126 CDS Trans