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Detailed information on CNT0033559


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P07089|RBS_FLATR, E-value = 5e-27

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0045027, E-value = 1e-08 (A. thaliana)
CNT0002009, E-value = 4e-15 (G. max)
CNT0025517, E-value = 6e-08 (O. sativa)

Expression of CNT0033559

Peptides detected in this lncRNA

>peptide 1 (62 aa)
QIHNFDYFALDSFTMIGRSVFITIAVRLHGGQRRGAVTMHWQCRDDKCISYSFKCTILPINY*

>peptide 2 (45 aa)
ADSQLRLLRVGFFHHDWTKCLHHHRREASWGTETWRCNHALAMQR*

Sequence

>CNT0033559
AGCAGATTCACAACTTCGACTACTTCGCGTTGGATTCTTTCACCATGATTGGACGAAGTGTCTTCATCACCATCGCCGTGAGGCTTCATGGGGGACAGAG
ACGTGGCGCTGTAACCATGCACTGGCAATGCAGAGATGATAAGTGCATCTCATATAGTTTTAAGTGCACGATATTGCCAATAAATTACTAACTTGGCGCA
TGTTCTCTCTACCCATAAAATTCTGCCAGCTTTGAAGATTTTGGTTTTATACCTAACAAGTAATTTTGACATAAACTCATAAGCATATAATAAACAATAT
ATTGAGTAAGTACTTCATATGTAGGACTGCAAAGGATTATTGCAGAAAATAACAATAACCAAGCTTGAAATAGTAATTAAATACATATATGTTCAAGTAA
AGATTTCATAAAATCGAAAGATTCCATAATACAAAATGCTCGAGAAGGCTCTATTGCCATGTAAATGACTCACTCCCAATTTATCAGACTTAGAGCTGCT
AACTGATCCAGGGGCCAAGTGCTCGGCAGATTAATCTAGTTGGGCCTGGAGACCAAGAACCCGCAGATCTGCACCTGCTTCTTGCTGTCGAAGCCCAAGA
CGCGGACCCAGCAGCTGGGGAACTGCGACTTGCACTCCTGGATCTCCCTCAGCACCTGAGAAGAGTCGGTGCACCCGAACATGGGCAGCTTCCACATGGT
CCAGTAGCGCCCATCGTAGTAGCCCGAGGAACCCGCGCCGGAGAAGTTGGTGCGGCTCACGGATCCAACCTGACCCAACACACGATTGCGCCACATTAGT
ACGATTCTCCGTGTTGTCAACTCACTCTTCTCCGAAACACGAGCTGCCGATTTTGTGCTGAGGACATGGGGATACTCTTTATCATGGCAGAGTCAATCTT
GTGAAGAGCCCATACTCAATGATCTACTCTAACGCATAGAGCTTGCACATGGCGGATTAAGTAGAGCCTGCACTTACAGTGTCGAATTCGATGCAGGGAA
TCAGGTTCTGCTGGATCATGTAGTCCACCTGCTTAGCAATCTGGTCATCGGTCAGTGGGGGCAAGTACGAGAAGGTCTCGAACTTGGGCTGTCCGATCGG
GTTCCACACCTGAGCACAATTTCACCAAATCGCAGAGCCACATTAGAACACCACCTCCTAGCCCCAATACCACCACCATCATGCGCTTGAAACCCGTTCC
TACGCAACAGCAATAATATATTGCAAAGTACTTGATCCTGGGGTAGGATGAACACACCTGCATGCATTGCACGCGGCTGCCATTCTGGACGGCTCCCAAC
T

lncRNA-RNA interactions

Number of interactions: 9

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
PP1S204_93V6.1 Ribulose bisphosphate carboxylase small chain protein coding CNT0033559 2696 889 CDS_UTR Trans
PP1S204_96V6.1 Ribulose bisphosphate carboxylase small chain protein coding CNT0033559 2944 985 CDS_UTR Cis
PP1S227_129V6.1 protein coding CNT0033559 224 140 CDS Trans
PP1S25_114V6.1 protein coding CNT0033559 1517 596 CDS_UTR Trans
PP1S25_119V6.1 protein coding CNT0033559 1429 594 CDS_UTR Trans
PP1S312_46V6.1 Ribulose bisphosphate carboxylase small chain protein coding CNT0033559 637 249 CDS_UTR Trans
PP1S374_50V6.1 Ribulose bisphosphate carboxylase small chain protein coding CNT0033559 603 235 CDS Trans
PP1S459_2V6.1 Ribulose bisphosphate carboxylase small chain protein coding CNT0033559 608 279 CDS_UTR Trans
PP1S459_2V6.2 Ribulose bisphosphate carboxylase small chain protein coding CNT0033559 608 279 CDS_UTR Trans