Detailed information on CNT0033726


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q96564|RS27_HORVU, E-value = 4e-17

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0004985, E-value = 1e-14 (V. vinifera)
CNT0042889, E-value = 1e-18 (A. thaliana)
CNT0002061, E-value = 1e-08 (G. max)
CNT0024131, E-value = 9e-16 (A. trichopoda)
CNT0028316, E-value = 6e-17 (O. sativa)
CNT0011121, E-value = 2e-07 (S. tuberosum)
CNT0038582, E-value = 9e-13 (S. moellendorffii)

Expression of CNT0033726

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MSKPKTKSRVWCSNSEHGTHSSFMPRRFPKLGFNENLWFIVNCYEFLCRVSGIREFLV*

>peptide 2 (64 aa)
MVLSNDIDLLQPPAELEKRKHKLKRLVQSPNSFFMVTFHSFALNLHSSGHLVPSDSILLTSCLI*

>peptide 3 (44 aa)
MRRTTVFSHSQTVVLCSSCSTVLCQPTGGRARLTEGCSFRKKGD*

>peptide 4 (41 aa)
LQLCPSLSLSLSLSLSLPLSLALSLSLCEPLGFKTHASGHR*

>peptide 5 (30 aa)
SNSVRLSLSLSLSLSLSLSLSRSLSVCVSH*

Sequence

>CNT0033726
CTCCAACTCTGTCCGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCGCGCTCTCTCTCAGTCTGTGTGAGCCATTAGGGTTTA
AAACCCACGCCTCAGGGCATCGTTGATCCTTCCTGCGCCGAATCGCTGGCTCTGCTGACCCTGAAAGAAAGGCTTGCACCGCATCTCCATCACTCCCCCC
ATCTGCCCCCTCTGCTCTGCTCTGCTCTGTTCTGTCCGTCACCATGGTGCTTTCCAATGACATCGACTTGTTGCAACCTCCGGCGGAACTTGAAAAGAGG
AAGCACAAGCTGAAGAGGCTTGTGCAGTCCCCTAATTCCTTTTTCATGGTAACATTCCATTCTTTTGCCTTGAATTTGCACTCGTCAGGCCATTTGGTTC
CATCAGATTCCATTTTACTAACCAGTTGTCTTATCTAAACTTCGCAATTTTGTCGAACATGCAGCTTTAGTGTTCTGTCGATCTTTGAGTAGCAGTTATT
TCGTTCATGTTAACTCATATGAGAAGCTTTTCTCTTATCTAGGGCATTGATTTTAGGGTTTTCTGGCCGTATTTGGATCGGTAATTGTATTAGCAGGTAA
TCAGGCTCTAATCTTTTTTTGTCTTTTTTCTTTTTGCTTACGACCCAGGATGTGAAGTGCCAGGGATGCTTCAGTATGTAAGACGTCTTGGCCGATCTGG
TGTCTGCCGTTTTCTAGTCTGTGTGAGATGATAGAACAAATGTACTGATACTTGAAATCTATTATCGTCTATGCTGTTGGTTTATGTGATTGGATAACGA
AAACATCAGGATTTTTTTCAACAAAAGGATAACCGATACGTGTGAATGCGCAGAACCACCGTGTTTAGTCACTCCCAGACCGTAGTGTTGTGCAGCAGCT
GCTCTACAGTCCTTTGCCAGCCCACTGGTGGAAGAGCTCGCTTGACTGAGGGTTGTTCTTTTAGGAAGAAAGGAGATTAAATGTAGATATTGAAGCAGAA
TGAGTAAGCCCAAAACAAAAAGCAGGGTCTGGTGTAGCAATAGCGAGCATGGCACACACAGTTCTTTTATGCCTCGTCGATTTCCCAAGTTGGGTTTTAA
TGAAAATCTTTGGTTTATTGTAAACTGCTATGAATTTCTTTGTAGGGTCAGTGGAATCAGAGAATTCTTGGTATGAATGTACTGCAGTAGTGTTGAATTT
GAC

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
PP1S58_41V6.1 protein coding CNT0033726 90 83 CDS Trans