Detailed information on CNT0003391


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9AQU5|PIP13_MAIZE, E-value = 4e-24

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0000345, E-value = 1e-10 (G. max)

Expression of CNT0003391

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MPMGQGRIKEFFIQRGSNIIIIIQEYSIIYTLR*

>peptide 2 (35 aa)
MASIKFQGLNDPKHPTIRCIYGGVLTQLHEGQWTQ*

>peptide 3 (80 aa)
MVPWQRDKAPICLVLLDLPPHPVQITSHPYLLPNIHYKSIVMELFPFQKTTNFIQNQLALMKIPGLKHIKNQAPVHKNKD*

>peptide 4 (39 aa)
MKIPEGLRTYQKPSTSSQEQGLKSFHGAFHGLLTKGKPI*

>peptide 5 (29 aa)
MNHIPSFSPQCNGLGNHPMRYVLIAETEH*

>peptide 6 (33 aa)
MFCNHLKENSQVGKFMKNPTSLQTTSQDKEKTV*

>peptide 7 (35 aa)
MDIYAYGAGKDKRILHSKGVQHNNNNTRILNNLHT*

>peptide 8 (30 aa)
MKQGWSHEVEKEIREYIQGRESLWRFSWHQ*

>peptide 9 (33 aa)
MALMTICWYMAARAAPMNGPTQKLPCHPMHALC*

>peptide 10 (37 aa)
MPMNFNTNHKIIPVDYSKATKIDTHTHGYLCLWGREG*

>peptide 11 (50 aa)
MLSVEDDSSSKTPGWVNASSCDGDGGQVNQEHCKPNGEGGQNLHIFKNFG*

>peptide 12 (32 aa)
MSSHACSLLKMIAAPRLLAGLMPVPVMGMVAK*

Sequence

>CNT0003391
TTTAATGAAATTTCAAACCACATTCCAAGTTCCCAATGGGCGGAAACAAGCTTGAATCTTCATGAGTGAAAAGGAGCTAATAAAGCAGTAAGTAGTGTCT
TTCTAACATTTTGTTGGGACAGCCCTTGGTATGATCATCTTTGTGTGGGTATTTTTTTGTTCTTCCTTTTTGGTGGTCCCATATGCTTGATGATTGTTTG
GGTTCTTGTTTTTTCGTTTGTCCTTTTCTGGCGGCCCATTGCCTAATCTAGCCCCATACCCGCGCCCCTTCTCCACCTACTGCCTTATTATCAAATTTAT
TTTGTTGAGCTTGTCTCTGTCCACTTATCCTCTTATGCCGATGAATTTCAACACAAATCACAAAATAATTCCAGTTGATTACAGCAAAGCCACAAAAATA
GATACTCATACTCATGGATATTTATGCCTATGGGGCAGGGAAGGATAAAAGAATTCTTCATTCAAAGGGGGTCCAACATAATAATAATAATACAAGAATA
CTCAATAATTTACACACTTAGGTAGTAGGAGTACATTAAAACACCAAATCCACATGAGAGAAACAAAATGCACAACAGAGAAAAGGGGTAAAAAGGCCAA
TCTCAAGCCCTGCTCTTGAATGGAATGGCTCTGATGACTATCTGCTGGTACATGGCAGCAAGAGCAGCTCCAATGAACGGTCCCACCCAGAAGCTACCAT
GTCATCCCATGCATGCTCTCTGTTGAAGATGATAGCAGCTCCAAGACTCCTGGCTGGGTTAATGCCAGTTCCTGTGATGGGGATGGTGGCCAAGTGAACC
AAGAACACTGCAAACCCAATGGGGAGGGGGGCCAAAATCTGCATATATTCAAGAATTTCGGTTAGGGTAACTCAAGATTTGTATGGGACTTGTTCACATT
TCTAGTAATGGTAACTACCCTCTAACTACCAAAGAAAATTTCAACTCAGACGAGAGAGTGGGATAGAGTTTTAATCCAAGAAAATTTGCTATTTTGAGTA
CAGGAACCATTTTTTTTTTGGCAAAGGCCCAAAATCATCCAATGAATCTCCCAAAATTAGTTTGCCCATCGTATATATTAATCAAAATAAGATTATATAT
TTAAACTTCTCCAAAAGCCCATAGGAAATGAGCAAAATATCAAACACAAAACTATTTTCAAAACCCCAAACTTGTGTCACAGTATCACTTTTGGAAATGA
TAGAATGAATTATTCCATATGAATCATATCCCCTCTTTCTCTCCTCAATGTAATGGATTAGGGAACCACCCGATGCGGTATGTCCTGATTGCCGAAACAG
AACATTGAAACCAGATGGCAAGTATAAAATTTCAAGGTCTCAATGACCCAAAACATCCTACCATCCGTTGCATTTATGGTGGGGTTTTGACACAACTACA
TGAAGGACAGTGGACACAGTGAAGAACACATGATTTCTCACTAGTAATGCCTTCTGAGCTAACAAAGTTTTAAATGTCCATGCTTGTATCATGAGACAAG
CTTACTTAAGAGTTTGGTGGGTCGGATGCCCACCACGAAACAACACGTAGAGACACACACACAGACACAAGACCAATTAAAAATGACATATGCTGCAGCA
TGAGGTCCATGAACAGATAATTTAGCGCACAAGATATCCATGCTACCCATTTATTTTACTTCACTATAAGACAACAAAGCACATAGAAGTATCATTATGG
TTCCTTGGCAAAGAGATAAGGCCCCCATTTGTCTTGTCCTACTGGACCTACCCCCCCACCCAGTTCAGATCACATCCCATCCTTACCTGCTACCAAACAT
CCACTACAAGTCAATAGTAATGGAACTATTTCCGTTTCAGAAAACCACCAATTTTATTCAAAACCAGCTTGCCTTAATGAAAATTCCAGGTCTAAAACAT
ATCAAAAACCAAGCACCAGTTCACAAGAACAAGGACTGAAGAGCTTCCATGGACTATTAACAAAAGGAAAACCCATCTAGAGATTATGTTTTGCAACCAT
CTAAAAGAAAACTCACAAGTTCCGTTTCAGAAAACCACTAATTTTATTCAAAACCAGCTTACCTAAATGAAAATTCCAGAAGGTCTAAGAACATATCAAA
AACCAAGCACCAGTTCACAAGAACAAGGACTGAAGAGCTTCCATGGAGCCTTCCATGGACTATTAACAAAAGGAAAACCCATCTAGAGATTATGTTTTGC
AACCATCTAAAAGAAAACTCACAAGTTGGAAAGTTCATGAAGAATCCAACTTCTTTACAAACCACATCACAAGATAAAGAGAAGACAGTGTAAACAGATA
GCAGTCGACAGATACTAGATCAAGTAAAGATACCAAACAGTCAAGACTACAGAGACAGATCAAGCAAAGATACCAAGAAAATCCACTTGCAAGGATCGTG
AAACAAGATACCACCCATCCCAAGAATCAAGAACCCAAAAATAATGAGAAAAAACAAAAAATAAGATTCCAAGGAAAGTAAAATCATAATATGAAACAAG
GATGGTCTCATGAAGTTGAGAAAGAAATAAGAGAATACATACAGGGACGTGAGAGTCTCTGGCGTTTCTCTTGGCATCAGTAGCAGAGAAGACAGTGTAA
ACAAGAACGAAGGTGCCAACAATCTCAGCACCAAGGCACTGCATTATGATGTAGAAAATTGCCCTGGTAAGAGACAGCTTCCTCGCCAGTAGCAGACCAA
AGGTCACAGCTGGGTTGATGTGTCCTCCTGAGACAACAAACCACACAAAACTTC

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_02s0025g03390.t01 Putative aquaporin protein coding CNT0003391 1112 395 CDS Cis
VIT_02s0025g03390.t01 Putative aquaporin protein coding CNT0003391 378 127 CDS Cis
VIT_02s0025g03390.t01 Putative aquaporin protein coding CNT0003391 958 345 CDS Cis