Detailed information on CNT0034218


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0005713, E-value = 1e-08 (V. vinifera)
CNT0043837, E-value = 1e-08 (A. thaliana)
CNT0002061, E-value = 4e-08 (G. max)
CNT0023034, E-value = 3e-09 (A. trichopoda)
CNT0032384, E-value = 3e-09 (O. sativa)
CNT0011121, E-value = 2e-07 (S. tuberosum)
CNT0038582, E-value = 3e-09 (S. moellendorffii)

Expression of CNT0034218

Nothing found.

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MHQCPPPRRRLCRGGSFPWRAGAAAFPPCCSEVMSPSLNECPTL*

>peptide 2 (163 aa)
MNALPSDNEIAEAALRGWGRGKANNEVQIRVCCKQSQHDGLVALALSLSLSLSLSPTTDSLSQHEVSNVSTILAPLVLSKFHTMREKLGENHWYHSFLRF
SLRRVAPTLPDHCDTNLFRLLTFPSSPYTGQLDVSCDSHFTLYGESFSSHISTLCSGLASRYS*

>peptide 3 (31 aa)
MSFVPRFSFNRPCAQFFCCAEVKHTHSPGSP*

>peptide 4 (82 aa)
MPYPLIMKLQKRRYGVGGGARLTMRFRSGFAANKASMTDWLLWLSLSLSLSLSRPQPIPFPSTRLATCRLYWHHLSYLNSTP*

>peptide 5 (29 aa)
MVEDNESQLQHSFKDGGNLECRLRENGLIS

Sequence

>CNT0034218
CTGATAACGAGAATTAAGCCACAAGGGTTCTCGTGAGCACGGTGAGCTATGCATCAGTGCCCACCTCCAAGAAGAAGGCTTTGTCGAGGAGGAAGTTTTC
CTTGGCGTGCAGGAGCAGCTGCTTTTCCTCCTTGCTGTAGCGAAGTGATGTCTCCATCGCTAAATGAATGCCCTACCCTCTGATAATGAAATTGCAGAAG
CGGCGCTACGGGGTTGGGGGAGGGGCAAGGCTAACAATGAGGTTCAGATCAGGGTTTGCTGCAAACAAAGCCAGCATGACGGACTGGTTGCTTTGGCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCGCCCACAACCGATTCCCTTTCCCAGCACGAGGTTAGCAACGTGTCGACTATATTGGCACCACTTGTCCTATCT
AAATTCCACACCATGAGGGAAAAATTGGGTGAGAATCACTGGTACCACTCATTCCTTCGCTTCAGTCTGCGGCGCGTCGCTCCCACCCTTCCTGATCACT
GTGACACCAACTTATTTAGACTTCTCACTTTCCCCTCGAGTCCGTACACCGGACAGTTGGACGTGTCGTGTGATAGCCATTTCACACTTTATGGCGAATC
GTTCAGTTCACATATTTCAACACTCTGCAGCGGCTTGGCCTCTAGGTACAGCTAATGCTGTGAAGCAAAGGTGATGTCATTCGTACCGCGGTTTAGCTTC
AATCGTCCCTGTGCACAGTTCTTCTGTTGTGCAGAGGTCAAACATACACATTCTCCTGGCTCACCGTAATGTACTAATTGTTCTCGTGAAAGCTAAATTT
GTCGTCGCAGTCTTTATTCCTATACAAAATTGTCTGTACACAAGGTGATGATGAATCCTCTGGAAACTTCCGGTATCAATGGCCAAATAAACAAGAATGG
TTGAGGACAATGAGAGTCAACTACAGCACAGCTTCAAAGATGGTGGCAATCTTGAGTGTCGGTTGAGAGAAAATGGCTTAATTTCTC

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
PP1S93_70V6.1 Predicted protein protein coding CNT0034218 476 157 CDS Cis