Detailed information on CNT0034496


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0001975, E-value = 9e-06 (G. max)

Expression of CNT0034496

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MVVCFLGSLQSQIYFLNLLPLDHHKPSFILQNLCRGNQDLVDDSLQALVRFTVLGTRVPDISDFLYLHFEKKKKKEFEKSSSHKT*

>peptide 2 (71 aa)
MRDGDVISSVFSQLQTLHLDVQSCEHMKPLLTRVVEFHLVISVVVDPVPRGVSPSPPLKTALLRPSISFDT*

>peptide 3 (34 aa)
MNLSSDCIILIETSSLSITSISPRPLRVEVLHMR*

>peptide 4 (46 aa)
MSAERFRISSTFVDKASWKNCFDFACLYMKLTFKSCVIIAPDRYAQ*

>peptide 5 (58 aa)
MIVCKRSSASQFWELEYRISAISCIYILKKKKKKNLKNPPHIRLEWTVAPNFSVNLTR*

>peptide 6 (61 aa)
CEEHGHGCKPKLEPLLTQATSLEQITESKTESIMKIHEDYECRKIQDLLNVCGQGKLEKLL*

>peptide 7 (31 aa)
MNLNILKSGPPKRVFYFPPGVRHSSFAAECA*

>peptide 8 (46 aa)
MSFCLSIISLVCCSFAASFLSASSAAALFSSSAFPSSSTYLESEPK*

Sequence

>CNT0034496
CTGTGAGGAGCATGGGCACGGTTGCAAACCAAAGCTTGAACCTCTGCTGACACAAGCAACATCCTTGGAGCAAATCACGGAGAGCAAGACTGAGTCAATC
ATGAAGATTCACGAAGATTATGAGTGCAGAAAGATTCAGGATCTCCTCAACGTTTGTGGACAAGGCAAGTTGGAAAAATTGCTTTGATTTTGCTTGTCTG
TACATGAAATTGACCTTTAAAAGTTGTGTGATCATAGCTCCTGACAGATACGCACAATAATAATCTTAAAACCCTTCGGTAACTTTAGAATCCTATAATA
CTCTAACTAAACCTGCTCAGCCCTGTTAATGTGTATACCGTGGCCGAGAGCTATCGCAAGAAGCTGAGAGAAAAACTGCATGACGTATTCCCAAATGAAG
ATGATGCGTGAAGTAAATGGGTCTCTCGGGATAATCAATATTCATAATTGACTGGTTGGTCATGGGCTACAGTTGTAGATGCTGTCCGATTAGAGTTTCG
TCGGGAAGATGAGAGACGGTGACGTGATTTCTTCAGTGTTCTCACAACTTCAGACACTTCACTTGGATGTACAATCATGTGAACACATGAAGCCACTTTT
AACTCGGGTTGTGGAATTCCACCTCGTCATCTCGGTTGTCGTTGATCCTGTTCCGAGGGGGGTTTCACCTTCACCACCTCTGAAAACAGCGTTGTTACGA
CCAAGTATATCATTCGATACGTGAGACCTATCCAAAAGCCAGCAATAGCCCAGGGTACGGATAAAGGACTCCTCACCCTGCCGTAGCTCTCCATCATCTG
TTGGAATACCTCAGAGACCACCAGGCCCAGCAGCTTCACCGACAAGTTTGTCAAAGAAATAGGAAGTGCTGGTTTGTCACCGTCTTCATGCACTAGCCGC
TTGATTTGAAAATCTGCGTTTCCTCTTTCATTCTCAGATGAACTTGAACATTCTGAAATCTGGTCCACCGAAAAGAGTATTTTATTTTCCACCTGGTGTG
AGACACTCGAGCTTTGCTGCAGAATGTGCTTAAGTGCGTCTTCAAGGTGGACTAGGCCGTATGTTTGAATCGCCTCCCTCTCGCACTGTACAAATCCTGA
AGGTTCTCCGCTCACAAGACGTAGAATAATGTCTTTCTGCCTCTCTATAATATCATTAGTTTGTTGCTCTTTTGCGGCCAGCTTTCTCTCTGCCTCCTCC
GCTGCAGCCCTATTTTCTTCAAGCGCCTTCCCAAGTTCTTCTACATATCTGGAATCAGAACCAAAATAACACATCTGTTACTCTTAGTGCTAGTCTCATA
TTTTGACTCGTAAAGAGATTGACTGCCTACAACCATGACGTGCATCCCCTCCATGGCTTGGGCTCCATGCACGGTTGAGTTTCTTAATCTCTCGCATGTT
ACCAACATTGATGTCTGAGAATAATGCGAGTAACAAGCAAAAGCCTCAGAAACTTTAGCAGACCATACTGATATATGTAGAAAAACCTCAAAGCCAGAAC
TCTTTTCGAAGCGCGGAAGTACTAAGATTGTTTGCCTTGCTGATCTGTCTTTCTCTTCCTTCAGGTCGGCACACACATGGTGGTATGCTTCTTGGGCTCT
CTGCAAAGCCAGATTTACTTCTTGAATCTTCTCCCTCTCGACCATCATAAACCCTCTTTCATCCTCCAAAATCTTTGCCGTGGGAACCAAGATCTGGTTG
ATGATAGTTTGCAAGCGCTCGTCCGCTTCACAGTTCTGGGAACTAGAGTACCGGATATCAGCGATTTCCTGTATTTACATTTTGAAAAAAAAAAAAAAAA
AGAATTTGAAAAATCCTCCTCACATAAGACTTGAATGGACCGTAGCGCCCAATTTTTCAGTCAACTTAACCCGATGAAATGCAAGAAAAATGGGTAATTA
TACATGCTTGAAAGGGGATTATAGACTCAAAGATGATCGAAACAAATGGACTGAGTAACATCACAGCTCGACGTTTCATGGTGGCAATTTAGAGTAACTA
GTCGTTACAAATTGAGAGGTTTAACAACAGAGGATCTCTACCACAAGGAGGTGCTGCAAAGATGATTCGCTCCACACGTCAGGGTACGCTCGCATGAATC
TCTCGAGCGATTGCATCATTTTAATTGAGACTTCTTCTTTGTCGATCACCTCAATTTCACCGAGGCCTTTGAGGGTAGAAGTCCTCCATATGCGATGATC
TCTCTGTGATTTACATGGAGCCTTTCCGGCATGCTTTCTAGGTTGCAGCAAAGTCAGACCCAGGTCTTGCGATTTTAGTACGACGACTTTCTCCATACTT
ACGATTCTGAATCTCCTACTTCAGAGGTTATGGCCCACCTCGGCAGTTCACATGGTTACCAATTCTTATGCTGCGGAGGCTGACAAATACAATATGCGGT
TCTGAAGCGTACTTTGTCTCACATTGAAATCGTGCACTATTTCTCCTAAGCATGCAGAAGCGGAATTGAATAACCTGAGGCGATCAAGACACGCACTAAA
ACCGTAACTCCAAAGACCGAAGCTCAGAGTTACCCGAATCGGCCAAAGCGTCCTTCAAGGTCGACGAACCTCGCTAGCAACTCTTCAACTCTGCCCAATT
CTGACATATTCCATTATGCAATTGAACGAGTCAAACTCTTCTGTGGAAATCACCATCTCTAAACACAACACCATCTCTACACTGTGACGACCACCAAGCC
CGAACTAAAACTGTAAACTCAACACAATCCAGTGAATTGATCCAAGGTCAATACAACCGAAAACGTCATCTCCACGACACGGCAAAAACTCCCTTCACCC
GAGGTCGCTGCCGGCTGTAACAGGGACGCCCGTCAATCCGCGACACCATTCAAATCAGTGCAAGTCATCAGCGACCACTAGACCACACTACAAGTCGCCA
ATTCGAAGAAATTCCCCACGAAAACAAAGAAGCGAAACCCGCAGCGGAGCAGTTCGAAGCTTTGTGCTAAGTGAGGGAGGGAAGGAAGAAGAAGAAGAAG
GAGGAGGAGGAGGGAATCCGAATGCGTTTGGTTTGGATGGTTCTACTTCAAACCCGCGCTAGTTCGAAATTGG

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
PP1S64_203V6.1 Predicted protein protein coding CNT0034496 6420 2234 CDS Cis