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Detailed information on CNT0000345


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P93004|PIP27_ARATH, E-value = 7e-22

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0003391, E-value = 2e-11 (V. vinifera)

Expression of CNT0000345

Peptides detected in this lncRNA

>peptide 1 (35 aa)
CSKDVLVVKCSHCCSNNWSNPEYPLMIMKQFTKIN*

>peptide 2 (57 aa)
MSGYYVYLIIPDFVFVVDYSCSETPCWVNASTSNWDCSQVNHEHGKSNRKWRQYLFA*

Sequence

>CNT0000345
CTGCTCTAAGGATGTATTGGTGGTAAAATGCAGCCACTGCTGCTCCAACAATTGGTCCAACCCAGAATATCCACTGATGATCATGAAACAATTCACCAAA
ATTAATTAGACCACCATCAGCATCCATATCAGCATCCATAACAAACTTTCAACATCATTATTTTTCTTTGGTAAAAAATGTAACAAGTAATAGTATGTTT
GTATTTAAATATATATTCTCTTAATAAAACAGATGATTTTTTTTTTAATAAGGGAAAGGAAACAATAAGTTAAGTTTATGAGTGGATATTATGTTTACCT
GATCATCCCAGATTTTGTCTTCGTTGTAGATTACAGCTGCTCCGAAACTCCTTGCTGGGTTAATGCCAGTACCAGTAATTGGGATTGTAGCCAAGTGAAC
CATGAACACGGCAAATCCAATAGGAAGTGGCGCCAGTACCTTTTTGCATAAGGCAAAGAGATAAATTAGAAAAGAGATGCATAGAAGAGGTGATATTTAT
AATGAATTAATAATGATAGAAAATTATTATAGAAACTATT

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA11G20593.1 Uncharacterized protein protein coding CNT0000345 468 174 CDS Trans
GLYMA11G20593.1 Uncharacterized protein protein coding CNT0000345 281 128 CDS Trans
GLYMA12G08041.1 Uncharacterized protein protein coding CNT0000345 1440 540 CDS Cis
GLYMA14G24424.1 Uncharacterized protein protein coding CNT0000345 206 151 CDS Trans