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Detailed information on CNT0034678


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9ZQX4|VATF_ARATH, E-value = 1e-17

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004985, E-value = 3e-16 (V. vinifera)
CNT0042889, E-value = 1e-18 (A. thaliana)
CNT0019000, E-value = 2e-08 (Z. mays)
CNT0002061, E-value = 8e-08 (G. max)
CNT0024131, E-value = 3e-16 (A. trichopoda)
CNT0031443, E-value = 6e-18 (O. sativa)
CNT0012080, E-value = 5e-09 (S. tuberosum)
CNT0038582, E-value = 3e-13 (S. moellendorffii)

Expression of CNT0034678

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MIQCTLNMRSSYYTKLPPAYKRTGFYTTQYNMRNPLEKNSFAGRTLRRIT*

>peptide 2 (42 aa)
MTSGKMCAFSLSISLSLSLSLSLSLYIYVTCVWEAALTVVHN*

>peptide 3 (32 aa)
MQVTPDPQNPTLPPTLSTTEISQHAKSSSQPK*

>peptide 4 (31 aa)
MRTIAMSSRLVNSLNESSICFTVVSAGVFTI*

>peptide 5 (47 aa)
MNPRFASQWSLQAYLQYKKNIYNSLLPCTSPIDISTELFYNFKKLAL*

Sequence

>CNT0034678
GTATGCCGAGTAGATTATAGTACAGTTTTTGAGATTGATAAGGGTACAATACCAAGGACACATGGGTAGCGTGGAACAAATGCCTCGGCACAATTAAACA
ATTAAGACGATGATCCAATGCACTCTTAACATGAGGTCTTCTTATTACACTAAATTACCGCCTGCTTATAAGAGGACGGGTTTCTATACAACTCAATACA
ACATGCGAAATCCTCTGGAAAAAAACTCATTTGCGGGCAGAACCCTCAGAAGGATCACTTGAAAACATGTGCTTCACTCGTGACAAGATCGAATCTTGAC
TTGGGTCATAAGGATGGTCCTTTGATGGTATCTCGAGTATCGCTGGAAGTGGTTTAGAGTAACTATCAATCATGAAGCGAATCATGTTGGCAATCTGCAC
AATGGTTGACAACGGAAGTCCTGAGCATTCATACTAAAATTACAAGAGATATGTTACAAGCTTGATATCATATTTATTCAGCTATAAAACAAATCACCTG
TCGGAAACAATTAACCATCAGTGCAGACGATTGTTAAGTTCGAGAGAAAAATAACCAGCAAATGATTGGCAATACTCAACTCTAATTATGTGCAAGGAGA
GAGGAAACCCACATATTGACTTATGAGAACGATAGCTATGTCCTCACGGTTGGTGAATTCCTTAAATGAATCCTCGATTTGCTTCACAGTGGTCTCTGCA
GGCGTATTTACAATATAAAAAGAACATTTACAACAGCCTATTACCCTGTACGTCCCCCATAGACATCTCAACCGAACTGTTCTATAATTTCAAGAAGCTG
GCACTATGACCAGTGGAAAAATGTGCGCCTTCTCTCTCTCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACATATATGTTACGTGTGT
GTGGGAGGCAGCGCTTACTGTTGTCCACAACTAGGTAGTTGGTCTTTCGGCGTAGGTCTACATTGCCCACACCTGCTAGCAAAAATCCTGTTACTGTATC
CTGCCAAAAGAGCACCCCAATACACCTCAATACCTACACTTCTAGTTTGTAATACATCCCAAAGGATCCCATCCGCTTGACATTCAAAGCGCCCCAGTTT
CATAGACATTAGATCTCGAACATTGACACCTACGGGTTTGAAAGAAAACAACAGTTGCTACAAAAGTCATAAACCTAATAACTGCTTAAAGGATATCGCC
AGATACACCCCAAAAACCAAGACATCGAATAGAGGCAACGTCTCACACCTCTAGATTCAAACTTATTCTCAGTAAACCTTAAAAGTCAAAGAAGCCAACG
CCAACACCTCCCACCAATCTCCACCATACTAAATCATGCCCGTTCCATTCCCACAGTTATTGAATCACACAAGATCACAAACGTATCCGCCTTAAATAAA
GAGAAAAAACATCATTAAACGTCAGAGCTGAGTCGGAGGAAAAATCTCAACACACTCAGAATGCAAGTAACCCCAGATCCACAAAACCCTACGTTGCCCC
CCACCCTCTCAACTACAGAAATTTCCCAACACGCAAAATCCTCCTCACAACCAAAGTAAACGACCCTCGAAACTGGAACCCTTCACCTGCATCAACTGCA
CATCGACAATCCCCTCCACGACGCGGACCTAATCCCACGCCACAATCCCAACACAATCCGCCATACCGTAGAAAATCGGAGGATAGGACAGGAAAC

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
PP1S50_182V6.1 V-type proton ATPase subunit F protein coding CNT0034678 3532 1250 CDS_UTR Cis