« Back to Physcomitrella patens searchLow confident - view alignments »


Detailed information on CNT0034732


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9M9L0|APC11_ARATH, E-value = 3e-50

BLAST vs NONCODE (A. thaliana): nothing found

Potentially orthologous lncRNAs:
CNT0040020 in S. moellendorffii

Most similar lncRNAs:
CNT0007009, E-value = 1e-07 (V. vinifera)
CNT0001132, E-value = 3e-21 (G. max)
CNT0022405, E-value = 2e-06 (A. trichopoda)
CNT0010904, E-value = 6e-07 (S. tuberosum)
CNT0040020, E-value = 1e-23 (S. moellendorffii)

Expression of CNT0034732

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MAFDGCCPDCKMPGDDCPLMWGACNHAFHLHCILKWVNSQSPRPQCPMCRRDWKFRAE*

>peptide 2 (32 aa)
VSDVDENPVVKCGMLRCLLFLLFRRRRGVSLF*

>peptide 3 (38 aa)
MHWIKKNTKKAHNTTEQNYPQQRRSDRHEKLKQRAVTP*

>peptide 4 (29 aa)
MECTLEGKLATLAVEVKKDQLTREQVLEL*

>peptide 5 (45 aa)
MKVNILNGMLLHRGPGTRTMMLVEYVVWHSTDAAPTAKCLAMTAL*

Sequence

>CNT0034732
GTCTCTGACGTCGATGAGAATCCAGTCGTAAAGTGTGGAATGCTCCGTTGTCTTCTTTTTCTTCTTTTTCGTCGTCGACGGGGTGTTTCTCTGTTTTGAA
GCCGGTCCTTGCTGCATGCACTGGATAAAGAAGAATACAAAAAAAGCACACAACACAACAGAACAGAACTACCCTCAACAACGACGCAGTGATCGCCACG
AGAAGTTGAAGCAGAGAGCCGTGACACCATGAAAGTCAATATTCTGAATGGCATGCTGTTGCATCGTGGACCTGGGACGCGCACGATGATGCTTGTGGAA
TATGTCGTATGGCATTCGACGGATGCTGCCCCGACTGCAAAATGCCTGGCGATGACTGCCCTCTGATGTGGGGAGCATGTAATCACGCATTCCATCTGCA
CTGCATCTTGAAGTGGGTGAACTCCCAGAGCCCGCGGCCTCAGTGCCCAATGTGTCGTCGGGACTGGAAATTTCGAGCAGAGTAATACCGGATGCACAAG
CATTGTCATCAAACCTTGTTATCCTCCGAACAGCGTCCTGGATAAGTTACTCTTAGCACATCGGTGTTTCGTTCAGTAGATTTGCACCCCATATGAAAGG
GAAAAAAGAAAAGAAAAAAAGAAAACATTTGTGTTGTTTAATTCTCACAAATGTTTAATTAGATGTTTAGAAATTCTGAAATGTAGCTGGTGTTCCGTCT
TCTTGTCTTGATCCTTGGATGGAGTGCACCCTAGAAGGCAAACTGGCAACTTTGGCTGTTGAAGTTAAAAAAGACCAACTGACGAGGGAACAGGTGCTAG
AACTTTGAACGTACTTGAATTTCTTG