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Detailed information on CNT0035276


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0007073, E-value = 2e-06 (V. vinifera)
CNT0042615, E-value = 4e-07 (A. thaliana)
CNT0020781, E-value = 2e-06 (Z. mays)
CNT0000589, E-value = 2e-06 (G. max)
CNT0023995, E-value = 4e-13 (A. trichopoda)
CNT0030567, E-value = 4e-07 (O. sativa)
CNT0008755, E-value = 6e-06 (S. tuberosum)
CNT0038248, E-value = 6e-06 (S. moellendorffii)

Expression of CNT0035276

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MYRSSRSVSAAVFTRQESIAANSPLDLPTQHQPFP

>peptide 2 (44 aa)
MEDGSIMDRIRHEKESVCVCVCEREREREREPRMLDLVRGRGND*

>peptide 3 (40 aa)
MERLWKMDLSWTEYGTRKKVCVCACARERERERENPECSI*

Sequence

>CNT0035276
GTAATCGTACCTGAACCATGACAGGCGTCTCGGTTCCCATTACTCGCCGTGCCAATTTGGAAGCCATCTGGGCCATCGCCATCGCCGGAGAGACCTAGAG
GGGGAGAAAACCAATTCTAGAAGCAGAAACGCTAAACTTCAGTCAGGCAAAATTCTGACAGTATCTTGCTTTCAAGACGGAAACAACAGAAGAGAAATCT
AGAGTATAACCCACATGGCTGAACCCTCACAACCTTGATAAAACAAAAAAACGCATGGAACGGCTATGGAAGATGGATCTATCATGGACAGAATACGGCA
CGAGAAAGAAAGTGTGTGTGTGTGCGTGTGCGAGAGAGAGAGAGAGAGAGAGAGAGAACCCAGAATGCTCGATTTAGTCAGGGGAAGGGGAAATGATTGA
CGTGCACACCTCGAGATCGTGCTGCTGTTAGAATCTCTACGTTCAGCAACCACGGACCAGAGGAAACAGGGCAATGTACAGAAGTTCAAGATCCGTTTCA
GCCGCTGTCTTCACACGTCAGGAATCGATTGCTGCAAATTCACCCCTCGACCTCCCTACTCAACACCAACCCTTTCCT

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
PP1S9_356V6.1 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein protein coding CNT0035276 1718 578 CDS_UTR Cis
PP1S9_356V6.2 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein protein coding CNT0035276 1718 578 CDS_UTR Cis
PP1S9_356V6.3 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein protein coding CNT0035276 1718 578 CDS_UTR Cis