Detailed information on CNT0035294


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0004985, E-value = 1e-11 (V. vinifera)
CNT0043112, E-value = 5e-11 (A. thaliana)
CNT0002061, E-value = 5e-08 (G. max)
CNT0022482, E-value = 8e-13 (A. trichopoda)
CNT0031800, E-value = 1e-11 (O. sativa)
CNT0012080, E-value = 2e-07 (S. tuberosum)
CNT0038582, E-value = 1e-11 (S. moellendorffii)

Expression of CNT0035294

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MALSTDFLVSSPLLAKLSHYICSVMCTGIKSFQFSRKSHQENTSKITMRKNIL*

>peptide 2 (72 aa)
MGNAYSKITGSRVCTELNAVKILNNYIRKFPLSLSLSLSLSLPMHSTQHAGLCHAPIHGAFNRFPGFLAAAR*

>peptide 3 (44 aa)
MRQNRLSSLQELHVVNQRIPRPTRRRPAEVRRRTPKIRYVPTPTL

>peptide 4 (90 aa)
MYRTKRRQNFEQLYPEIPPLSLSLSLSLSPHALNPTRWAVPRTNSWRFQPISWFPRRCSLNCLTTSAPSCVQGSNLSNFQEKVTKKILPK*

>peptide 5 (45 aa)
QGNGRFICTNVVVQAAPRQRARKLHGHTQWETLTVRLQGRVYVQN*

Sequence

>CNT0035294
TCAAGGTAATGGACGCTTTATTTGCACAAATGTTGTAGTACAGGCTGCACCTCGTCAAAGGGCTCGTAAATTACATGGACACACCCAATGGGAAACGCTT
ACAGTAAGATTACAGGGTCGCGTGTATGTACAGAACTAAACGCCGTCAAAATTTTGAACAACTATATCCGGAAATTCCCCCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCCCCATGCACTCAACCCAACACGCTGGGCTGTGCCACGCACCAATTCATGGCGCTTTCAACCGATTTCCTGGTTTCCTCGCCGCTGCT
CGCTAAACTGTCTCACTACATCTGCTCCGTCATGTGTACAGGGATCAAATCTTTCCAATTTTCAAGAAAAAGTCACCAAGAAAATACTTCCAAAATAACT
ATGCGAAAAAATATTCTATAAAAAAAGTATAAAAAGAAAAATACTCTCCAAACTCGAAAAAAAGCCACCTCCCCCAGGATCCTTCGACCACGCCTCTACA
CCGCTGCGCGCGTGTCCAACCTCCAAATCAGTCAAACCTGATTCCTCGAACTTCCTCTGGGCCGTCTCGTGCACACCCAGCACCGCTTCCGCTGTGTGCA
CCTTCGACTTCATCTGACCGCGTTTGGAGCGTCACAAAATCATTACCAAAAATCTATTCGCCCTCCCACTGGCATCGCCTTCTCCAATATCACACTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCGCTACCTACAACGTCTCCACTTCCACCCCCACCCTACCGTCACGCAAGTGCCGATACTCGAGACCGC
GAGTCCGCACCGCCCGACGCAAACCCCTCCACTCGCACCATCGGATTCCCGCCGAAAGACGTCGGCCCGCGACCCGACACCTGATGCGACAGAACCGACT
GAGCTCTCTGCAGGAACTGCACGTCGTGAATCAGCGGATTCCCCGACCGACTCGGAGGCGACCCGCAGAAGTACGGCGGCGAACACCCAAAATTCGATAC
GTCCCCACACCCACCCTGCA

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
PP1S9_276V6.1 protein coding CNT0035294 1892 605 CDS_UTR Cis