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Detailed information on CNT0035638


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0007064, E-value = 4e-11 (V. vinifera)
CNT0043554, E-value = 4e-08 (A. thaliana)
CNT0033570, E-value = 4e-11 (P. patens)
CNT0019995, E-value = 7e-22 (Z. mays)
CNT0000395, E-value = 4e-11 (G. max)
CNT0024260, E-value = 2e-25 (O. sativa)
CNT0010524, E-value = 6e-07 (S. tuberosum)

Expression of CNT0035638

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MRDLDVHGRVPSASVRSGPPRQEAGGGSCGQPPIAVQAARARLALTDCGPSAGDRLSCWRW*

>peptide 2 (29 aa)
MRVRWLIGDTSALWVIRVRWLIGRWGLGL*

>peptide 3 (55 aa)
GGGGGGRRGRRGTRASGASAQQHTWVMEAARCGAGGTCLSFFLSCARARAQGVNA*

>peptide 4 (98 aa)
GRRRWREEGEAGDPGERCERTAAHMGDGGGTVRCGWHLPVFLSFLRARAGAGRECVISMCMGVCRVPACEAGRHGRRQEEAAAGSRQLRCRQHVRGWH*

Sequence

>CNT0035638
GGGAGGCGGAGGTGGAGGGAGGAGGGGGAGGCGGGGGACCCGGGCGAGCGGTGCGAGCGCACAGCAGCACACATGGGTGATGGAGGCGGCACGGTGCGGT
GCGGGTGGCACCTGCCTGTCTTTCTTTCTTTCTTGCGCGCGCGCGCGGGCGCAGGGCGTGAATGCGTGATCTCGATGTGCATGGGCGTGTGCCGAGTGCC
AGCGTGCGAAGCGGGCCGCCACGGCAGGAGGCAGGAGGAGGCAGCTGCGGGCAGCCGCCAATTGCGGTGCAGGCAGCACGTGCGCGGCTGGCACTGACCG
ACTGCGGGCCGAGTGCTGGGGACCGGCTCAGTTGCTGGCGGTGGTAGGTTAGGGCTGTAGGTTGTTGTGGCGCGCGGCTGTAACAGTATTTCATGTAGCA
TTTATGAGGGACAGCTGTTCTTTGGGTGTTGGCCCTGGCCCCAGGACGACGTACATAGGCTGACGAGTGCGCTTCGGGTGATGAGAGTTAGGTGGTTGAT
AGGTGACACGAGTGCGCTTTGGGTGATAAGAGTTAGGTGGTTGATAGGTCGCTGGGGGCTGGGGCTGTAGCCTGGCAGCCAGTTTGTGATGACCGGAAGT
AACAGACATTAATGTGATCACGTTGGCAGTTTACACGAGTTTACAGACAGCGGCCTTCTCATCTTCTCCTGGTTTCGGGGGTTAACCGGGGGCCTCAGAC
ACACTCAACACACTCAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACACACTCTCTCTCTCTCTCTCTCTCT

lncRNA-RNA interactions

Number of interactions: 17

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
EDO97061 DEAH-box RNA helicase protein coding CNT0035638 378 126 CDS Trans
EDO97061 DEAH-box RNA helicase protein coding CNT0035638 283 130 CDS Trans
EDO99238 Predicted protein protein coding CNT0035638 363 128 CDS Trans
EDO99238 Predicted protein protein coding CNT0035638 320 107 CDS Trans
EDO99238 Predicted protein protein coding CNT0035638 354 124 CDS Trans
EDO99238 Predicted protein protein coding CNT0035638 348 122 CDS Trans
EDP00500 Glucose-6-phosphate 1-dehydrogenase protein coding CNT0035638 271 96 CDS Trans
EDP02815 Predicted protein protein coding CNT0035638 171 67 CDS Trans
EDP03546 Predicted protein protein coding CNT0035638 192 79 CDS Trans
EDP04256 Predicted protein protein coding CNT0035638 220 79 CDS Trans
EDP04256 Predicted protein protein coding CNT0035638 220 76 CDS Trans
EDP04256 Predicted protein protein coding CNT0035638 220 76 CDS Trans
EDP04256 Predicted protein protein coding CNT0035638 212 76 CDS Trans
EDP06273 UV-damaged DNA binding complex subunit 1 protein protein coding CNT0035638 311 130 CDS Trans
EDP06273 UV-damaged DNA binding complex subunit 1 protein protein coding CNT0035638 310 126 CDS Trans
EDP06545 Predicted protein protein coding CNT0035638 270 93 CDS Trans
EDP08097 Cytosine-C5 specific DNA methyltransferase protein coding CNT0035638 198 119 CDS Trans