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Detailed information on CNT0037249


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005582, E-value = 8e-06 (V. vinifera)
CNT0033314, E-value = 1e-10 (P. patens)
CNT0002951, E-value = 2e-09 (G. max)
CNT0023377, E-value = 4e-14 (A. trichopoda)
CNT0028147, E-value = 2e-25 (O. sativa)

Expression of CNT0037249

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLGRLWVRRAARGATTVPPLDKHVSNRPF*

>peptide 2 (74 aa)
MDVDCGCGCGVCVCVCVCVCVCVCVCVCVCVCVCVRVRVRRPQGRSSWWEWRWRDAGQALGAACGARGHYGTST*

>peptide 3 (114 aa)
EGPVEAAVQVGGTALTPGGGEEGAGREGQEERAGGVWGIAVHVKNGGPGGGHAGIVRTRWVERVRGGCVKHKGADGRGLWLWLWCVCVCVCVCVCVCVCV
CVCVCVCVCACACA*

>peptide 4 (47 aa)
MFLLGLHCAIASMMFARVARRLLTSGGVVAVWVGATRVIPKAARRGL*

>peptide 5 (33 aa)
MSGRRGWGPCHRVGVWLCGRGCKTGIQWWEQVS*

Sequence

>CNT0037249
TGAAGGGCCAGTGGAAGCGGCGGTCCAGGTCGGCGGCACTGCGCTGACCCCGGGGGGGGGCGAGGAGGGGGCGGGCAGAGAGGGGCAGGAGGAGCGGGCA
GGAGGTGTGTGGGGGATAGCTGTTCATGTGAAGAACGGGGGCCCAGGAGGCGGACATGCGGGGATTGTGAGGACGCGTTGGGTTGAGCGGGTGAGGGGTG
GCTGCGTGAAGCACAAGGGCGCGGATGGACGTGGATTGTGGTTGTGGTTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGCGTGTGCGTAGGCCGCAGGGAAGGAGTTCGTGGTGGGAGTGGCGCTGGCGGGATGCTGGGCAGGC
TCTGGGTGCGGCGTGCGGCGCGCGGGGCCACTACGGTACCTCCACTTGACAAGCATGTAAGCAACCGGCCGTTCTGAGCTGCGACCGTGATGTTTCTCCT
GGGTCTTCATTGCGCCATAGCCTCGATGATGTTCGCACGAGTAGCCCGTCGCCTTCTCACTTCGGGTGGCGTTGTGGCCGTGTGGGTGGGGGCTACGAGA
GTGATACCGAAAGCAGCTCGACGGGGTCTCTAAATGTCAGGTCGACGTGGGTGGGGGCCGTGTCATCGTGTGGGTGTGTGGCTGTGTGGGAGAGGGTGCA
AAACGGGTATACAATGGTGGGAGCAAGTGTCGTGATGCGGC

lncRNA-RNA interactions

Number of interactions: 10

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
EDO96263 Predicted protein protein coding CNT0037249 251 93 CDS Trans
EDO97606 FAD-linked oxidases family protein protein coding CNT0037249 193 90 CDS Trans
EDO98969 Predicted protein protein coding CNT0037249 257 117 CDS Trans
EDO99203 Dicer-like protein protein coding CNT0037249 128 92 CDS Trans
EDP01649 Starch branching enzyme protein coding CNT0037249 224 106 CDS Trans
EDP05401 Aldehyde dehydrogenase protein coding CNT0037249 148 104 CDS Trans
EDP06333 Cytochrome P450, CYP85 clan protein coding CNT0037249 216 112 CDS Trans
EDP06654 cleavage and polyadenylation specificity factor 73 kDa subunit-II protein coding CNT0037249 161 86 CDS Trans
EDP07222 Putative uncharacterized protein protein coding CNT0037249 208 108 CDS Trans
EDP07222 Putative uncharacterized protein protein coding CNT0037249 189 102 CDS Trans