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Detailed information on CNT0037273


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005582, E-value = 3e-07 (V. vinifera)
CNT0033314, E-value = 5e-09 (P. patens)
CNT0002951, E-value = 8e-11 (G. max)
CNT0023377, E-value = 1e-15 (A. trichopoda)
CNT0028147, E-value = 6e-24 (O. sativa)
CNT0013460, E-value = 5e-06 (S. tuberosum)

Expression of CNT0037273

Peptides detected in this lncRNA

>peptide 1 (146 aa)
SELTEEPDRMAAAEALAEGWVVVWELVTALSEAAAGRAPPRGVLRLSAVDIARSMSTAAVNTLQPSTVHFQFQVCVCVCVCVCVCVCVCLCACVCVCVLK
NETKARPDDAGVTYLCVCVCVCVCVCVCVYVCVCVCVCVCVCVCVCV

Sequence

>CNT0037273
GCAGTGAGCTGACGGAGGAGCCGGACCGCATGGCGGCGGCGGAGGCGCTGGCGGAGGGCTGGGTGGTGGTGTGGGAGCTGGTGACGGCTCTCAGCGAGGC
GGCGGCGGGGCGGGCGCCGCCGCGGGGCGTGCTGCGGCTGTCGGCGGTGGACATTGCGAGGAGTATGTCCACCGCTGCGGTCAACACGCTGCAGCCGTCC
ACAGTGCACTTCCAGTTCCAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGCGTGTGTGTGTGTGTGTGTGTTAA
AAAACGAAACGAAAGCCCGCCCAGACGACGCCGGAGTTACTTACTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
EDO96263 Predicted protein protein coding CNT0037273 211 74 CDS Trans
EDO97061 DEAH-box RNA helicase protein coding CNT0037273 167 89 CDS Trans
EDP06654 cleavage and polyadenylation specificity factor 73 kDa subunit-II protein coding CNT0037273 155 84 CDS Trans
EDP07300 Predicted protein protein coding CNT0037273 162 177 CDS Trans
EDP07300 Predicted protein protein coding CNT0037273 199 181 CDS Trans
EDP07300 Predicted protein protein coding CNT0037273 178 191 CDS Trans