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Detailed information on CNT0003805


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0000802, E-value = 8e-09 (G. max)

Expression of CNT0003805

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.0950.11900.21700.0980000.112grain (SRR866531)grain (SRR866540)grain (SRR866544)seeds (SRR866574)seeds (SRR866575)skin (SRR866568)skin (SRR866569)skin (SRR866570)skin (SRR866571)skin (SRR866572)00.010.020.030.040.050.060.070.080.090.10.110.120.130.140.150.160.170.180.190.20.210.220.…0.23

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MQSPCRTPRIVKVNSSKASNAVTRCLLCENLTHLETLMQSILNHFQGFISQVAVL*

>peptide 2 (40 aa)
MREFDTFRDTNAVNPKSFPRFYQSGCSSVTGSTVSRKQGL*

Sequence

>CNT0003805
ATAACAGCTAACTAGCGTCAATATAATCACAAGAAAAATTCTGAAAGAAAATATTCATAATCCAACAGCAGAATCCAGCATTCTGCATGGCTTGAAATTG
TTTTATTCCACAATTCATAGCAGTAGTTTACATCCAAACAAGCATCTATTTACAATAGATAAACAAAGCTTTATATTTACATCCATCCATATTTTATTTC
TGCTATGCGGTATGTACAGTACTGAAGAGGGTTTTAGATAGATAGATACACAATAGATAAACAAAGCTATCCTGGGCTGATAGCAAGAATTTACAAAGTA
TTTTTCGACTGTTTTGAAATTATTCAAGTATAAAGCAGAAATTTACAAAGTATTTTTCAGCAGTTCCCAAACTATTCAGGTCGAAAGCTTACCAAATTGG
GAAGGGCAGTTGACTGAAGCTTCCTGATTTCAGATGCAGTCACCTTGCAGGACTCCAAGGATAGTGAAAGTAAATTCTTCAAAGGCTTCAAATGCTGTAA
CCCGTTGTTTGTTATGCGAGAATTTGACACATTTAGAGACACTAATGCAGTCAATCCTAAATCATTTCCAAGGTTTTATCAGTCAGGTTGCAGTTCTGTG
ACAGGTTCAACAGTGTCAAGGAAGCAAGGCCTTTGATATTCTTTACTCCAGCGTCGGTTAATCCTCCACCGCATATTTCTAGTGTCTGGAGGTTCTTGAA
GTCTAATTCAAG