Detailed information on CNT0003834


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0018242, E-value = 7e-09 (Z. mays)
CNT0002954, E-value = 2e-06 (G. max)

Expression of CNT0003834

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MFLAFSASHHFLTSPNSSAGFPRRNSLLIPVHSLTESNLLKDMDSPLQKFLLTCNPCC*

>peptide 2 (41 aa)
MERDKVKASAVIHIEQAYFLYFLSFFLSFFLSVTWLYYENW*

>peptide 3 (58 aa)
MLLDNAACGVVNAISIVGSDLTNGYSINCLADGWLFSCWHCGLGSEGIWFLLCGAVLI*

>peptide 4 (47 aa)
MRMLLPSYCRLGNLGLCHHIQQLDSNSHMLSSPGNPLKSEQNSTSEL*

>peptide 5 (48 aa)
MHLTKCLIHLTKCLIHLTLIWNTVGITSIIRMTKGRSHPSINTHIECF*

>peptide 6 (40 aa)
MLDPSDQMFDPSDAHMEYCRNNKHHQNDQRQVPSQYQHPY*

>peptide 7 (30 aa)
MQFDPLLISNLNSAIKSGIQYSTCYMQYNM*

>peptide 8 (44 aa)
MIVATCQEYLQGRLPTFTASNSSYSLCQMSSDYNFTVSKAFRTK*

>peptide 9 (30 aa)
MQFDPLLISNLNSAIKSGIQYSTCYMQYNM*

>peptide 10 (35 aa)
MLALWAWVRRDMVLAVWCSSNIVIPDMAVINYRYR*

>peptide 11 (32 aa)
MKSQCYFVRYNKIVSSTILLEISFKPQEKGWN*

>peptide 12 (52 aa)
MLLVELSMPSPLLDQTSQMGIRSIAWPMGGYFHVGIVGLGQKGYGSCCVVQF*

Sequence

>CNT0003834
CTTATATTTAAAGCCTCAGAATCAATTCGCAGAACAATATGATCAACAAGAACTGAGGATTGTAAAATTACAAAGAGGGCTTTGATTCACTCCATACCTC
AGAAAGCTTACAATATGAAACAATATATCCTTCCCTAACAGTGACTAAGTTAGACTTATCGATATATAGCACAAACATGAAGAAAAACAGAAAACAGAGT
ATTCTCAGAAGAAAAGATATTCAAGAAAATTGAACAAAAAGATGGCATATGGAAAGGGATAAGGTGAAAGCCTCAGCTGTTATACATATAGAACAGGCAT
ATTTTCTGTATTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTGTAACTTGGCTTTATTACGAAAACTGGTAGTTGCTAGGATGGAGGTAAAGAAGTTG
AAATCATATACCAGGTTCAGGTTGGGAGTAGTGGTTGCCAGATACCAAGCATTCAATTCAGTCTAGCTCAACAAGCTGAGCTCTCCTCTCTGCTGCTTTC
TTCCTTATGAATATTCCCCATCTCAAGGCAGCTCTCAACTTAAGCCATCCCACAACAGCCTTTCCTGTTCCCCGGCCATGCACCTGACCAAATGCTTGAT
CCATCTGACCAAATGTTTGATCCATCTGACGCTCATATGGAATACTGTAGGAATAACAAGCATCATCAGAATGACCAAAGGCAGGTCCCATCCCAGTATC
AACACCCATATTGAATGTTTTTAGCATTCTCTGCATCTCATCATTTTCTAACATCTCCGAACTCCTCAGCCGGATTTCCTCGGAGAAATAGTCTTCTAAT
CCCTGTCCATTCCTTGACCGAGAGCAATCTCCTGAAAGATATGGATTCCCCCTTGCAGAAGTTCCTGCTGACATGTAATCCATGCTGCTAGATAATGCTG
CTTGTGGAGTTGTCAATGCCATCTCCATTGTTGGATCAGACCTCACAAATGGGTATTCGATCAATTGCCTGGCCGATGGGTGGTTATTTTCATGTTGGCA
TTGTGGGCTTGGGTCAGAAGGGATATGGTTCTTGCTGTGTGGTGCAGTTCTAATATAGTGATCCCTGACATGGCCGTGATCAACTATAGGTATAGATGAG
GATGTTGTTACCTTCTTACTGTCGATTAGGGAATTTAGGACTTTGCCATCATATTCAACAACTTGACTCCAATTCTCATATGCTCTCTTCACCAGGGAAT
CCGTTGAAATCTGAACAGAATTCCACAAGTGAGCTATAATTATGGAGATGAATGAAATCACAATGTTATTTTGTTAGGTATAACAAAATTGTTAGTTCTA
CTATATTATTAGAAATATCATTCAAACCCCAAGAGAAAGGTTGGAACTAATTATTAGGTGTTGTTTACAGTCTAACAAATGATAGTTGCGACATGCCAAG
AATATCTGCAGGGCAGACTACCAACATTCACTGCATCCAATTCAAGCTATTCCTTATGCCAAATGAGCAGTGATTATAACTTTACTGTCAGCAAAGCATT
TCGAACAAAATAACCTGGTGTCAAGTTACCAATTTACTCAAAAGTTTAAGCTGTTAGGTAATAGGCCAACAATATCTATCAAGCTAACACCAGGCAAGGA
GCAAAATCAATCATTAAGTATCATTCAGGATGTGACGATATTCCACATGGCTTGATATGAGTGGACCTTCAGGTTGTATATGAAAATCCCCAGTACTTCA
TATTTTCTGTGCCATTCTGGTTTCATTATCTTGATCATTTATCATTTATGCTTTATTTGATTTTTCGCAATCTATCTTTTCCATGCAATTTGATCCTCTT
CTTATTAGCAATCTAAACTCAGCTATAAAATCTGGAATTCAATATTCCACATGTTACATGTAATGGAATTTATTTAGTAACTCCCCTAAAGAACACTGTG
GATGTGTGCAAGTACGTGAGTACCAATATTTGATTGTTCACAATCTATCTTTTCCATGCAATTTGATCCTCTTCTTATTAGCAATCTAAACTCAGCTATA
AAATCTGGAATTCAATATTCCACATGTTATATGCAATATAACATGTAATGGAATTTATTTAGTAACTCCCCTAAAGAACACTGTGGATGTGTGCAAGTAC
GTGAGTACCAATATTTGATTCTTCGCAATCTATCTTTTCCATGCAATTTGATCCTCTTCTTATTAGCAATCTAAACTCAGCTATAAAATCTGGAATTCAA
TATTCCACATGTTATATGCAATATAACATGTAATGGAATTTATTTAGTAACTCC

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_11s0206g00070.t01 Putative uncharacterized protein protein coding CNT0003834 3914 1399 CDS_UTR Cis
VIT_11s0206g00080.t01 Putative uncharacterized protein protein coding CNT0003834 786 291 CDS Cis