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Detailed information on CNT0003887


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0043564, E-value = 4e-11 (A. thaliana)
CNT0035158, E-value = 3e-12 (P. patens)
CNT0019907, E-value = 3e-12 (Z. mays)
CNT0000817, E-value = 3e-12 (G. max)
CNT0022384, E-value = 1e-11 (A. trichopoda)
CNT0030302, E-value = 1e-11 (O. sativa)
CNT0008938, E-value = 3e-09 (S. tuberosum)

Expression of CNT0003887

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MWLSLGLICWLILGMLSGSSDCRRCMPMP*

>peptide 2 (99 aa)
RKAYIYSVKERNSCSLYTFNNDEYILHNFHYGCAFSSCFLPLFSSHYLSPFFHELNCQENCRNGGSFAAQNNSIAEEDDELHAPCFGLKGAPSSSLFLL*

>peptide 3 (67 aa)
MMNIYYTTFTMDAPSRLVFSLCSPLTIFLLFSMSLIVKKTAEMGVPLQPKTTPSLKKMMNFMLLVLD*

Sequence

>CNT0003887
AGAAAAGCATATATATACAGTGTGAAAGAGAGAAACAGCTGTTCTCTATATACATTTAATAATGATGAATATATACTACACAACTTTCACTATGGATGCG
CCTTCTCGTCTTGTTTTCTCCCTTTGTTCTCCTCTCACTATCTTTCTCCTTTTTTCCATGAGCTTAATTGTCAAGAAAACTGCAGAAATGGGGGTTCCTT
TGCAGCCCAAAACAACTCCATCGCTGAAGAAGATGATGAACTTCATGCTCCTTGTTTTGGACTGAAGGGAGCTCCTAGTTCTTCTCTTTTCCTTCTCTAA
TGGCTTTCAAGGCTGGAAACTATTAACCAATATACGTATATATATATATATATATATATATATATATATATGCCTAGAGAGTGTTTGCTATCTTGGAGGA
TTGGATATATCTAAGGGCCAGTTGCAGCTGTTGCTGTTGTTGGACATTGCAGTTGATACGCGAGCATAACGTGGTGTCTCCACCGCCACCGCCTAGCGGT
ATCACAGGGAGGTTGTCGCAGTTGCAGATCTCGATCATGGAGCCATCAGGATCGTGGAAGAAGAGTTGATCAACGCAGATTCCACCCTCCTCCACCCTAC
TCTGCACGTACTCTATCTTCATCTCCTTAAGCTTTTTCTCCACTGTTGCCATGCTTTCACACTGCCATGTATCAAGAGAGATTTTGTCATTTTATCACAT
GTTTTCAACTATTCATAGAAAACGACAATAGAATGGACTGAAACAGCTCTGCATTTTCCCTGGCATTTTCTGTTCTTTATTTTTTTTTTCCCCTAGAATC
AAACAGAGAGAGAGAGAGAGAGAGACGTACTTGAAATGAAATGTGGTTGTCCTTGGGATTAATCTGCTGGCTGATCTTGGGCATGTTGTCAGGGTCTTCA
GATTGCAGGAGATGTATGCCCATGCCATAATTGTATAACCTTAATCA

lncRNA-RNA interactions

Number of interactions: 3

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_11s0016g05010.t01 Putative uncharacterized protein protein coding CNT0003887 749 268 UTR3 Cis
VIT_11s0016g05010.t01 Putative uncharacterized protein protein coding CNT0003887 932 338 UTR3 Cis
VIT_11s0016g05010.t01 Putative uncharacterized protein protein coding CNT0003887 1537 532 CDS Cis