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Detailed information on CNT0000395


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O48650|SUI1_SALBA, E-value = 2e-30

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005931, E-value = 5e-35 (V. vinifera)
CNT0043554, E-value = 3e-08 (A. thaliana)
CNT0035015, E-value = 1e-07 (P. patens)
CNT0019995, E-value = 3e-11 (Z. mays)
CNT0024260, E-value = 3e-11 (O. sativa)
CNT0010524, E-value = 1e-13 (S. tuberosum)
CNT0037290, E-value = 6e-13 (C. reinhardtii)

Expression of CNT0000395

Sequence

>CNT0000395
AAATTAATTAGGACAACACACTATATAGCACAAACATGAGGCAATAGTTACCTGGACCAGGAAGGTAGAAACATTCTTCCTCTGATCACCTTGAAGTTGA
ATACCTGTCCTAGTTCTGGGTCCTGAACAACTGTTCCATTGCAACAGAACTCTTTCTTAACATCTTTAAGTATCTTGTTATAGCTGAATTCTTTTTTCAA
TCCCTGAACGGTTGTCAGGCTTTTCCTTCCATTTCGCTGCTGTACGCGAATATGCACATACTCCTTTGACCCAGCACCCGAGTCATCAGCATTTGCATCA
GCAAAAGGATCTACAAATTGAGGGCAGACAACACATTACACACACACACACACACACACACACACACACACATATATATATATTGCATTCAATCACTAAA
TATAACTGGTAACAATCAGTCACTAAGTACCTATAAGATATACAGATTACTTACAGCAAGACATAAAAGTTAGAATAGTTTGACACAGAAATTGTGAAGT
TCAACAATAGGTACCCTATTCTGCTAGTACAGATACCACAATAAAACTAAGAGAGGAAACATTTAAAGAAAAAACCCACTATGTTAATCTTACATATATA
CTGATATTTATTCCCTGGAAAAAGATCACAACATACCGAAGGCAGTAGGAATTTGATCGTCTAATTCAGACATAAAACTTGACTCTCTAAGACCAAAGGT
TCTACCAACCAGATTGCTCAGACCTGAAATTA

lncRNA-RNA interactions

Number of interactions: 11

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA06G42061.1 protein coding CNT0000395 615 228 CDS Trans
GLYMA06G42061.1 protein coding CNT0000395 219 103 CDS Trans
GLYMA06G42061.1 protein coding CNT0000395 561 322 CDS_UTR Trans
GLYMA06G42071.1 Uncharacterized protein protein coding CNT0000395 611 228 CDS Trans
GLYMA06G42071.1 Uncharacterized protein protein coding CNT0000395 239 103 CDS Trans
GLYMA06G42071.1 Uncharacterized protein protein coding CNT0000395 370 240 CDS_UTR Trans
GLYMA08G37440.1 Uncharacterized protein protein coding CNT0000395 95 46 CDS Trans
GLYMA08G37440.1 Uncharacterized protein protein coding CNT0000395 89 44 CDS Trans
GLYMA12G16390.1 Uncharacterized protein protein coding CNT0000395 282 103 CDS Cis
GLYMA12G16390.1 Uncharacterized protein protein coding CNT0000395 1728 632 CDS_UTR Cis
GLYMA19G03550.1 Uncharacterized protein protein coding CNT0000395 255 170 CDS Trans