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Detailed information on CNT0039778


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004985, E-value = 2e-10 (V. vinifera)
CNT0042546, E-value = 2e-10 (A. thaliana)
CNT0033726, E-value = 1e-11 (P. patens)
CNT0002061, E-value = 5e-08 (G. max)
CNT0023466, E-value = 6e-11 (A. trichopoda)
CNT0031800, E-value = 2e-10 (O. sativa)
CNT0012080, E-value = 2e-07 (S. tuberosum)

Expression of CNT0039778

ERR364347: 6.365 RPKM

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MWSGDGLNGGCSGELGQPRRIKAAQLATMRPGIPW*

>peptide 2 (38 aa)
MLVESEFLERPLNPFLLSFFLFVSSFTFLSIDDPFASV*

>peptide 3 (146 aa)
MSLSNLLLGLFLLVFLATSRSQCPTNPSGIANDTQTLLSLGDRLGIKAWNETANPRAWRGVEWSSDNRVEGLNMSRLHLSGVLPSIWAELPSLARLDLSQ
NNIVSLEVAGCKNTQLKLLNLSSNSLREVPANLSSLESLESLDLSGN

>peptide 4 (89 aa)
MARCGVELGQPSGGPQYVQVTSLGSSSFHLGRASIAGSLGPLAKQHRLAGGGWLQEHAAQAPQLELQFSARGPGKPLQPRELGKPGPQWE

>peptide 5 (70 aa)
MRFFSSRLARACLRDPAIPLMMLRRRSSGHVSLQFAAGFVSTRLSRNISVAVPHESIRDRQRHTDSALSR*

Sequence

>CNT0039778
ATCGATCTTAAAAAGTAAAACCCATAACCACGATTCCATGGTCTTGGTTTAAATTTCAGCCGTTGGATCGCGTCCAAATGGGGCTACAATGGCCGTTGGA
TGTGGAGCGGCGATGGATTGAATGGTGGGTGTAGTGGAGAATTAGGGCAGCCGCGAAGGATCAAGGCAGCGCAATTGGCGACAATGCGGCCAGGGATTCC
GTGGTAATGATTCGCTTTTGGACAACAAAGTGGTGTATGACCAGATCGATTGTCTCCGCTCCCTCCTCTTTATGCTAGTGGAGTCTGAATTTTTGGAGCG
TCCACTCAATCCATTCCTTCTCTCCTTCTTCCTCTTTGTCTCCTCTTTTACTTTCCTCTCGATCGATGATCCATTCGCTTCCGTGTGAGAGAGAGAGGAT
GATCCTTCTTCCACCAGCGATCTAGGGCCCGGATCGCACGGGTCGTCGCCGTGAAGGGCTAGTGACGGGCAGCGTGACGGGCACCGACGACTTGCGCTCT
TCCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCTCTCTTTTATAATTCTCATTCTTCCAGAGTAACTATTCCTGCGAGGCCAGCGGTCGACGG
AACAGGCGCCGCGAAAGCGTGTTGATATTGCGAGTGAGCTCCTAGATCATGCGCTTCTTCTCTTCCCGGTTGGCCAGAGCTTGCTTGCGTGATCCAGCGA
TTCCTTTGATGATGCTAAGAAGAAGAAGTAGCGGCCATGTCTCTCTCCAATTTGCTGCTGGGTTTGTTTCTACTCGTCTTTCTCGCAACATCTCGGTCGC
AGTGCCCCACGAATCCATCCGGGATCGCCAACGACACACAGACTCTGCTCTCTCTCGGTGACAGGCTTGGCATCAAAGCGTGGAACGAGACCGCCAATCC
AAGAGCATGGCGCGGTGTGGAGTGGAGCTCGGACAACCGAGTGGAGGGCCTCAATATGTCCAGGTTACATCTCTCGGGAGTTCTTCCTTCCATCTGGGCC
GAGCTTCCATCGCTGGCTCGCTTGGACCTCTCGCAAAACAACATCGTCTCGCTGGAGGTGGCTGGTTGCAAGAACACGCAGCTCAAGCTCCTCAACTTGA
GCTCCAATTCTCTGCGAGAGGTCCCGGCAAACCTCTCCAGCCTCGAGAGCTTGGAAAGCCTGGACCTCAGTGGGAAC