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Detailed information on CNT0039786


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004985, E-value = 1e-07 (V. vinifera)
CNT0042889, E-value = 7e-09 (A. thaliana)
CNT0034678, E-value = 7e-09 (P. patens)
CNT0002061, E-value = 6e-06 (G. max)
CNT0022348, E-value = 2e-09 (A. trichopoda)
CNT0028701, E-value = 1e-07 (O. sativa)
CNT0009344, E-value = 4e-07 (S. tuberosum)
CNT0035548, E-value = 4e-07 (C. reinhardtii)

Expression of CNT0039786

ERR364347: 4.437 RPKM

Peptides detected in this lncRNA

>peptide 1 (35 aa)
CVCQKRTPKREDEKFLVEESIHSLLSSRRKHRNLS*

>peptide 2 (65 aa)
MDQQQQQDQKKKGSSNNNSNSNTSGGGGSGSNNAAQQKSKSNSKRSIAETVNLAAQKFLADSSKK*

>peptide 3 (30 aa)
CVPKENTKERGREISGRGEHSLAAKFEKEA*

Sequence

>CNT0039786
TGTGTGTGCCAAAAGAGAACACCAAAGAGAGAGGACGAGAAATTTCTGGTCGAGGAGAGCATTCACTCGCTGCTAAGTTCGAGAAGGAAGCATAGAAATC
TTTCATAAGATCGCGAGCGAGAGAGAGAGAGAGATTGTGTGTGTGTGTGTGTGCTATAATAGAGCTTTGTTTTTGTGTGCTTTTGTTTTGAACGCTATCT
CTCTCTCTTTCTCTCTCTCTCTCTCTCTCGCTTTTATTTGTAACGCTCAGAGAGGTCTCGGCTTTGGCCGGGGCTTTGATCGCACTGCCGCGGTGCTGTC
ACTCAATATCGGTGCTGTGTGCCTCACATAAATTCGCTCGCTTCTCAAGGAAAAACCTTGTGTCACTTCCTCGATGGATCAACAGCAGCAGCAGGACCAG
AAGAAGAAGGGATCTTCAAACAATAACAGCAATAGCAACACCTCTGGGGGCGGGGGCAGTGGCAGTAACAATGCGGCGCAGCAAAAATCTAAATCGAATT
CCAAGCGCTCCATCGCGGAGACTGTGAACCTCGCCGCCCAGAAGTTCCTGGCAGACTCCTCAAAGAAGTGAAAAAAAAAAAAACGAGACGATCCAA