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Detailed information on CNT0040020


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9M9L0|APC11_ARATH, E-value = 2e-54

BLAST vs NONCODE (A. thaliana): nothing found

Potentially orthologous lncRNAs:
CNT0007009 in V. vinifera

CNT0042380 in A. thaliana

CNT0034732 in P. patens

Most similar lncRNAs:
CNT0007009, E-value = 6e-08 (V. vinifera)
CNT0042380, E-value = 3e-13 (A. thaliana)
CNT0034732, E-value = 5e-24 (P. patens)

Expression of CNT0040020

ERR364347: 18.04 RPKM

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MAFDGCCPDCKMPGDDCPLIWGACNHAFHLHCILKWVNSQSPRPQCPMCRREWKYRA*

>peptide 2 (50 aa)
MLPGLQDARRRLPSHLGSLQSRVPPPLYSQVGELAEPPTTVSYVSQGVEV*

>peptide 3 (33 aa)
MDAARIARCPATIALSFGELAITRSTSIVFSSG*

>peptide 4 (34 aa)
SRDRLGIVNLRMARCGFLDMGRARRRLWDLPNGV*

Sequence

>CNT0040020
GCTCTCGCGATCGGCTCGGCATTGTAAATCTTAGAATGGCACGCTGTGGCTTCTTGGACATGGGACGCGCACGACGACGCCTGTGGGATTTGCCGAATGG
CGTTTGATGGATGCTGCCCGGATTGCAAGATGCCCGGCGACGATTGCCCTCTCATTTGGGGAGCTTGCAATCACGCGTTCCACCTCCATTGTATTCTCAA
GTGGGTGAACTCGCAGAGCCCCCGACCACAGTGTCCTATGTGTCGCAGGGAGTGGAAGTATAGAGCATGAGAGACGAATAAACATGACGTCTGTGTGTTG
TTTGCGTGTATGTGTGCCAAAAGTTCTCCTTGTGGGAGTTGA