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Detailed information on CNT0004080


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9FJX0|PPIL2_ARATH, E-value = 2e-12

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0042615, E-value = 1e-11 (A. thaliana)
CNT0033040, E-value = 3e-12 (P. patens)
CNT0018900, E-value = 3e-12 (Z. mays)
CNT0002871, E-value = 1e-11 (G. max)
CNT0022033, E-value = 3e-12 (A. trichopoda)
CNT0026995, E-value = 7e-13 (O. sativa)
CNT0008755, E-value = 7e-10 (S. tuberosum)
CNT0038248, E-value = 3e-12 (S. moellendorffii)

Expression of CNT0004080

Peptides detected in this lncRNA

>peptide 1 (44 aa)
GTEAFLDLAPPHSVAHSVLVMNMRSLLCCFFPILNSAKIAMTIR*

>peptide 2 (35 aa)
MDFLNSFKGARALFLWLYAALVERERERERERESDR

>peptide 3 (43 aa)
RDGGVFGFGAAPFGGPLRFGYEHAIFAVLFLPHLEFSEDSDDN*

Sequence

>CNT0004080
AAGGGACGGAGGCGTTTTTGGATTTGGCGCCGCCCCATTCGGTGGCCCACTCCGTTTTGGTTATGAACATGCGATCTTTGCTGTGTTGTTTCTTCCCCAT
CTTGAATTCAGCGAAGATAGCGATGACAATTAGATAAACTATGGATTTTTTAAATTCATTCAAAGGAGCTAGGGCTCTGTTCCTCTGGTTGTACGCCGCG
CTCGTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGACAGA