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Detailed information on CNT0042380


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9M9L0|APC11_ARATH, E-value = 7e-56

BLAST vs NONCODE (A. thaliana): nothing found

Potentially orthologous lncRNAs:
CNT0040020 in S. moellendorffii

Most similar lncRNAs:
CNT0007009, E-value = 6e-55 (V. vinifera)
CNT0001132, E-value = 5e-46 (G. max)
CNT0022405, E-value = 2e-20 (A. trichopoda)
CNT0016572, E-value = 2e-48 (S. tuberosum)
CNT0040020, E-value = 1e-12 (S. moellendorffii)

Expression of CNT0042380

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MAYMIPGIYPSSVKTKHIQNSTCNKIHNFNF*

>peptide 2 (90 aa)
SVSFSPSFRFVTLFPKSDPLAIASKISFPVKNFSISISSFGYTIDLHTYFLDGMQLLHGHGMLKTKHVGYVGWLLMVVVLIANFLEMIAL*

>peptide 3 (57 aa)
MAFDGCCPDCKLPGDDCPLIWGACNHAFHLHCILKWVNSQTSQAHCPMCRREWQFKE*

>peptide 4 (46 aa)
MRGKINTPQPNLRKTPSGGKRMAIIISTKVAVLIFLSSLKVSEKIL*

>peptide 5 (51 aa)
RPSLFLLRFVSSRSFPSPILSPLPAKFLSRLRIFLFRFHRSATPSIFTLIF*

>peptide 6 (30 aa)
VRLFFSFVSFRHALSQVRSSRHCQQNFFPG*

Sequence

>CNT0042380
CGTCCGTCTCTTTTTCTCCTTCGTTTCGTTTCGTCACGCTCTTTCCCAAGTCCGATCCTCTCGCCATTGCCAGCAAAATTTCTTTCCCGGTTAAGAATTT
TTCTATTTCGATTTCATCGTTCGGCTACACCATCGATCTTCACACTTATTTTTTAGATGGCATGCAGTTGCTTCATGGACATGGGATGCTCAAGACGAAA
CATGTGGGATATGTCGGATGGCTTTTGATGGTTGTTGTCCTGATTGCAAACTTCCTGGAGATGATTGCCCTCTAATTTGGGGAGCCTGCAACCACGCGTT
TCATCTTCACTGTATATTGAAATGGGTGAATTCGCAGACGAGCCAAGCTCATTGCCCAATGTGCAGAAGAGAATGGCAGTTCAAAGAGTAAGCAAGTTAT
GAGGAGGATTAGTCTGCAGCTCTCGTCATAGGGGATGTTTTGGAATGATCTCGTGTAGTTGTATTTGGACCGTTAGTGTTGAGTATGATCATCTGCTGAA
ACGCAAGATAGAGCTTTAGTAATGTTTTTGAAGCTTGTCCTTGGTTTGATTGCTTGGACAAAGTAGAGATCAAGCAACTTTTTGTGAGCTTCATCATCTA
TATGGTCTTTGTTTTACAAACCAACGCTCTCTTCTTTTATATCAACACAACATTTATATAACAATGCAAACACAACAGTGATGATTAATTAAATTACTTG
AAACATAAAAACTCTGATGAAAGAAAAAGAAACGCTGAATCAGTCACAAAGATAGGAGAACACGACGGAACAGCTGTTCCTGCACAATAAACAACAAATG
TAAGTAAAGTTAAAAAGTTTGGTCATTAACTAGATATTTATCTCTATCCACATTAGAGTCTTATTACTCTCTTTTGTGTCAGAAATTTCTCATAATCTTA
TCTTATTAATAAGTAGATATTTATCTCTATCTGTACACATTAATTATGTGGTTTGAACAATATCTTAATTTATTATCATAATAATATTTATAACTTGAAA
CCATGTTTTCATAGCATAATTTTCGTTTGCTTTAAACCAAATTATCCGAATTAACATGATCTGAAATGTGTAGGTTTACCAAACATTTACTTAAACTTTC
CCAATGAAAAAGCTTCATACAAGAAAACTATATCAAAAATGACTCTGAGAGTGAGCCAAAGGGTAAAGAGAGAGAGAGAGAGAGAGAGCTTACAAGGAGA
TGATGATAGATGGTAAATCATTTGGTGAGGACATAAATGGCGTATATGATCCCAGGAATATACCCAAGTAGCGTCAAAACCAAACATATCCAAAACTCAA
CCTGCAACAAAATTCATAATTTCAACTTTTAATTTCTAGTGTGGATAAATGTAAAAAAAGAACCATATTTGACTAAAGTATAAGATTAATTAACCAAAAT
AAAACTCAGTCTAAATATGAGAGGAAAGATAAATACCCCGCAACCAAATCTGAGAAAGACACCGAGTGGAGGCAAGAGGATGGCGATAATAATATCAACG
AAAGTAGCTGTACTCATTTTTCTAAGCTCTTTGAAAGTTTCTGAGAAAATATTATAAAAGCTTCAAATTGTGTTTTTTATCTTCTTTACTCTATCTTCTT
CTTGTGATATATCTCTCACATTATATAGAGACCAACTTTTTAGATATTTTTGAGCCACGTATTGCCTTACCCTTTTTATTTTATTTGTTTCCTTTACCTT
TAAGCTAAATGAGGACTTTGTTTTTCTTTTCTTTTTTCTACATACAAGGCGAAAGGGATATTTTTTTGGCAAGATAGGTACTTAATCTTTCGTAACCACT
ACTAATTAGCATTAGGAGCA

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
AT3G05880.1 Low temperature and salt responsive protein family protein coding CNT0042380 2480 949 CDS_UTR Cis
AT3G05890.1 Low temperature and salt responsive protein family protein coding CNT0042380 96 69 UTR3 Trans