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Detailed information on CNT0042563


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P0DI77|CIN2_ARATH, E-value = 2e-103

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005582, E-value = 4e-06 (V. vinifera)
CNT0034328, E-value = 1e-09 (P. patens)
CNT0017419, E-value = 1e-06 (Z. mays)
CNT0032380, E-value = 1e-09 (O. sativa)
CNT0015837, E-value = 1e-09 (S. tuberosum)

Expression of CNT0042563

Peptides detected in this lncRNA

>peptide 1 (31 aa)
QAFCIYSSKLGLYPLLYHFASTRYVLHKSAH*

>peptide 2 (40 aa)
KHFAYILPSLVCILFCTTLLPLDMFYINLPTKKTHQIFKL*

>peptide 3 (71 aa)
MFLVSSSSTNFLICSVAKGLMTLCNLVSDFVERYDASYKEMIPFILLVLNVLLSIWSMITSNISEINGCFS*

>peptide 4 (32 aa)
MHLCTISCLAFSFSNGTAFLRHDTPSLVPQCF*

>peptide 5 (34 aa)
MSSLYDIEINFCKLDQDKIHVMFLLICIYVPSRV*

>peptide 6 (72 aa)
MIRLLSYLNVFSIFIINKFSYLFCCKRSDDFMQFSIRFRGKIRRFVQRNDTVYIVGLERITFYLVDDHIKYI*

>peptide 7 (45 aa)
MSSMVVTRALTIVMIRRIYPNCGSYINPTVQKYSRLFYLLQREVG*

>peptide 8 (55 aa)
MTSIFLYLSISHPMPLISLYKIRKHNLIYSGSSPRRFTSQLKIHKQICLDNTMYC*

Sequence

>CNT0042563
CAAGCATTTTGCATATATTCTTCCAAGCTTGGTTTGTATCCTCTTTTGTACCACTTTGCTTCCACTAGATATGTTCTACATAAATCTGCCCACTAAAAAA
ACACACCAAATATTTAAACTATGACATATTTGAATTAATAATTTCTACAAAAAAATAAACTTACCGATTTCTTGAGGTAAGGAATGACGTCAATCTTTTT
ATATTTGAGTATATCACATCCAATGCCATTGATTTCATTGTATAAAATAAGAAAACACAACCTCATATACTCGGGAAGCTCACCAAGACGATTTACATCC
CAACTGAAAATACATAAACAAATTTGCTTAGACAATACTATGTATTGTTAATATATACATTAAAACGAATCATGAAAATATGTGATCAAAATTCTTATAA
TTATTATTAACATAGGATTCACTTTCTGTAAATCATAAATTTTTCATTTGTAAAGAAATGTCTACATCCTTAGCAAAAACAAGATTATTGTCTCTGTAGT
TTGTAAGGAACACTTAAGATATAAAAGGTAGAATATATCAAAAATCTTTACATTAACAACCGCAATAATACGAAAAGCAAAAAATTATTTGATATATATA
TATATATATATGTGTGTGTGTGTGATCAGTTATTATTTTATAATAATATACCAAGAAAATGAAGAAGCTTAAGTAGAAGATTTCTGTAATAATGGTCTAG
TGGTAGACCATGGTACAGCTGCAAAATAACCAATTGATTGACCAAAAAAAGGTAGAATATTTCTTAACTTTTCAACCATGGAAGTGAATAGTTCTAGTTC
TTCAAGAGTGCCATAGATATCGTAGATGTCGTCAATGGTTGTAACAAGGGCATTAACTATAGTCATGATCCGTCGGATATATCCAAATTGTGGTTCGTAT
ATTAATCCAACGGTCCAAAAATATTCTCGACTATTCTATCTCTTACAAAGGGAAGTTGGTTAGTCAAACATGTATCCTTCCACCATCTTCATATCATTAA
CGAAAGAGGATTAGAACGAATTATGTATACAATAATTAACAACGAAAGACTAGTATCTATATTTCTTTGATAGTATTACCTTGAAACGTATTTGAGATCT
TCTTGATGAGCAGCTTGTACGATATTGAAATCAATTTTTGCAAACTCGATCAAGACAAGATTCATGTCATGTTTCTTCTCATATGCATCTATGTACCATC
TCGTGTCTAGCCTTCTCATTCTCCAATGGTACGGCATTTCTAAGGCATGATACGCCTTCTCTCGTACCTCAATGTTTTTAGTATCTTCATCATCAACAAA
TTTTCTTATTTGTTCTGTTGCAAAAGGTCTGATGACTTTATGCAATTTAGTATCCGATTTCGTGGAAAGATACGACGCTTCGTACAAAGAAATGATACCG
TTTATATTGTTGGTCTTGAACGTATTACTTTCTATTTGGTCGATGATCACATCAAATATATCTGAAATAAACGGTTGTTTCAGTTAATATATGATAT

lncRNA-RNA interactions

Number of interactions: 5

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
AT3G25810.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein protein coding CNT0042563 444 256 CDS Trans
AT3G25810.1 Terpenoid cyclases/Protein prenyltransferases superfamily protein protein coding CNT0042563 661 416 CDS Trans
AT3G25820.1 terpene synthase-like sequence-1,8-cineole protein coding CNT0042563 3886 1498 CDS Cis
AT3G25820.2 terpene synthase-like sequence-1,8-cineole protein coding CNT0042563 3886 1498 CDS Cis
AT3G25830.1 terpene synthase-like sequence-1,8-cineole protein coding CNT0042563 3886 1498 CDS Cis