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Detailed information on CNT0042675


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0001916, E-value = 6e-07 (G. max)
CNT0032006, E-value = 9e-06 (O. sativa)

Expression of CNT0042675

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MALYSLYQELIVLLVNFDSGYSLCYLPCD*

Sequence

>CNT0042675
TGGCTGCCTAAAGAAGGAATCTTTTGATGAATGATCCATTGAGAATCCACAACACCAATCTTCTCATGTGCAGGCTGTTTATTGAATCATTAAAAAGTGT
TTCTTCTTAGTTTCGAAAACGTTTTGTAAAATTATACGCGTTTGTGAATAAGTTGTATTTGTATGTTAACCTCGACGCATTTTCTTAGCGCAAAGTCAAG
ACCCCAACCGTGAACCAAGTCATTCTGAATCATATGCCACACACAACGCCATGCCTCTCTAGAGAAAACTGGAGCCATAATCTCTATAAACCTGATAAGG
AACCGTGCAAAACTTAATGGATCAAGAGAGTATGAATACTTATTGTATTGGTTTTGACAAATGAGATCCATACCCTGCACAAGGAGGTAGGTGAGGGTCA
TTGCAGCGGCCTGGTTTCTCTTCGACTTCTCTGATCAAAGAATTTGAAAAAGAATCACTATCTTTACTTTACTTAAACCATGGCATTGTACAGTTTATAT
CAAGAGTTAATTGTTTTACTTGTGAACTTCGATTCCGGGTATTCTCTTTGTTATCTTCCATGTGATTGATTTTCTTGATTCCACAGCGGGTTGCGATATT
TCTAGACCATGCTTATTCACAATCTTGATGTACCTGCAATAATGTAGAAAACATTTCATAACAGTTTCTGATTATATTATCAAAAGAAGCAGAGTACTTA
CTCTTCTGCGTCGAAGTTTTCAACGCCAAGATCTTCATCCCAAATGAATATATATTCATATGGTGCTATGATATCAGGATGCAGAAACCTTTT

lncRNA-RNA interactions

Number of interactions: 4

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
AT3G26440.1 Protein of unknown function (DUF707) protein coding CNT0042675 2170 793 CDS Cis
AT3G26440.2 Protein of unknown function (DUF707) protein coding CNT0042675 2170 793 CDS Cis
AT3G26440.3 Protein of unknown function (DUF707) protein coding CNT0042675 2170 793 CDS Cis
AT3G26440.4 Protein of unknown function (DUF707) protein coding CNT0042675 2170 793 CDS Cis