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Detailed information on CNT0042889


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0004985, E-value = 9e-24 (V. vinifera)
CNT0034678, E-value = 5e-19 (P. patens)
CNT0019000, E-value = 1e-16 (Z. mays)
CNT0002061, E-value = 2e-09 (G. max)
CNT0023953, E-value = 1e-35 (A. trichopoda)
CNT0031676, E-value = 4e-38 (O. sativa)
CNT0012080, E-value = 3e-08 (S. tuberosum)
CNT0038582, E-value = 8e-15 (S. moellendorffii)

Expression of CNT0042889

Peptides detected in this lncRNA

>peptide 1 (58 aa)
SLSLSLSLSLSLSLSLSLSLSLSLSLSLSLSLSLSQRNDDGEGDGDRAGLLIRRLRFN*

>peptide 2 (51 aa)
SLSLSLSLSLSLSLSLSLSLSLSLYLSLSLSLSLSLNETTMAKATATEPDF*

>peptide 3 (33 aa)
MSKRRRRRMRIRLLQNRWSRAHVENESNRRIAD*

>peptide 4 (71 aa)
LSLSLSLSLSLSLSLSLSLSLSLSISLSLSLSLSLSTKRRWRRRRRQSRTFDPTIKVQLKQSICCMSSCWA*

Sequence

>CNT0042889
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCAACGAAACGACGATGGCGAAGGCGACGGCGACAGAGCCGGACTTTTGATCCGACGATTAAGGTTCAATTGAAGCAGTCGATCTGTTGTATGA
GCAGTTGTTGGGCATGAGCAAACGACGACGACGACGGATGCGGATCCGTCTTTTGCAAAACCGGTGGTCACGAGCGCATGTGGAAAATGAATCGAATCGG
AGAATCGCTGACTGAAGCTCATAACTGCTAACATGAAGGAACTAGCAAGAGATTGAGAAGCTTGTGAAATTCAATCGCTTGGTACTTCTTAAACTAAGAG
TCTAAGATTCATAACCAAAGAGGTTAAATGGAGTGGTTGTGGAGACGATTGGTACAAGTAGAGAACGCAAGATATATTTATCACATCAACTAAATCAAGG
CATATTTAAAAGTGGTTGTTGTCTCATTGATTACCGGTTTGTGTTTAATATAGAGTTAAGCGTATAAGTACACTTTCATTCTTCTATTTCCTTCTTCTTT
AACCTTCAATTTTCTCTGAATTTCTCGTTTCCATCTTCTT