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Detailed information on CNT0043308


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P10798|RBS3B_ARATH, E-value = 4e-52

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0033006, E-value = 2e-10 (P. patens)
CNT0001988, E-value = 7e-13 (G. max)

Expression of CNT0043308

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MEASTLSSTVHRSIRECFRAHGTQIRAINT*

>peptide 2 (39 aa)
MQLTLPPLLAMEVMSLLVLRVTGNAADDFKPVNGATMVA*

Sequence

>CNT0043308
AAATTACATATTCATAAATCAGACATTTGACAATCCGATAGAAATTGTCTCATAAAGAGAAAAAGAACACAGACAATAGGAAATGAAATGAGCAGAGATA
ATTCATAAGAATGTTTTAGAAAAGAAATTAAGCTTCGGTGAAGCTTGGGGGCTTGTAGGCAATGAAACTGATGCATTGGACTTGACGGGTGTTGTCGAAT
CCGATGATCCTAATGAAGGCGCCCGGGTACTCCTTCTTGCATTCTTCAACTTCCTTCAACACTTGAGCGGAGTCGGTGCATCCGAACAATGGAAGCTTCC
ACATTGTCCAGTACCGTCCATCGTAGTATCCGGGAGTGTTTCCGTGCTCACGGTACACAAATCCGTGCTATAAACACATAAGAAAACCATTCAATACAAT
TGATATTGGAGGATATGCACAAGGTGATATAGTCTATTTCGGTTCTACAAAATCCGGTTATAGGCTAATATTTCTAGCAATGAAAACGAATAAATAATAA
TGATTAGTAGACAAAAGAAAACTTTTGTGTTTATTACCTCTAACTCGAATTCAACACAAGGAATCCACTTGTTGCGGAGAAGGTAGTCAACTTCCTTAGC
CAATTCGACGTCACTAAGGTCAGGGAGGTAAGATAGAGTCTCAAACTTCTTCTTTCCAATTGGTGGCCACACCTATAATCCCCAAATCCAATTCCAAATT
AATATATCCTATGTTTTGTTTTATTGCACATGACAAAAGACAGTTTTTATTGATGATATTACCTTCATGCAGCTAACTCTTCCCCCGTTGCTTGCGATGG
AAGTGATGTCCTTGTTGGTCTTGCGGGTGACCGGGAATGCAGCGGATGACTTCAAGCCGGTGAATGGAGCGACCATGGTGGCCTGAGCCGGGGATGTAAC
CACAGCGGCGGAGGAGAGCATAGAGGAAGCCATTACTTCTTCTTGTTGTTTCTCTTCTTCTTTTGGTTTTTC

lncRNA-RNA interactions

Number of interactions: 6

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
AT5G38410.1 Ribulose bisphosphate carboxylase (small chain) family protein protein coding CNT0043308 2718 965 CDS_UTR Cis
AT5G38410.2 Ribulose bisphosphate carboxylase (small chain) family protein protein coding CNT0043308 2718 965 CDS_UTR Cis
AT5G38410.3 Ribulose bisphosphate carboxylase (small chain) family protein protein coding CNT0043308 2718 965 CDS_UTR Cis
AT5G38420.1 Ribulose bisphosphate carboxylase (small chain) family protein protein coding CNT0043308 959 465 CDS_UTR Cis
AT5G38420.1 Ribulose bisphosphate carboxylase (small chain) family protein protein coding CNT0043308 744 298 CDS_UTR Cis
AT5G38430.1 Ribulose bisphosphate carboxylase (small chain) family protein protein coding CNT0043308 1993 837 CDS_UTR Trans