Detailed information on CNT0004337


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|O24661|ASNS_TRIVS, E-value = 6e-41

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs
: nothing found

Most similar lncRNAs
:
CNT0000283, E-value = 1e-06 (G. max)

Expression of CNT0004337

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MGFEPINPTVADTITELLFLPVENMLQGIKSLTELVSFIC*

>peptide 2 (34 aa)
MDYHIECLPTSTIAPKVYKYIIPWNPCIELSFQG*

>peptide 3 (37 aa)
MFPYGTLPCWAPCESISTHQKSHQSPLRISPSSLLVT*

>peptide 4 (35 aa)
MPPCQKDQGYLTTQNPIQLLWQCCMQRLLLPEQSA*

>peptide 5 (47 aa)
LSELCNRGKLHKLVFKPPQDTENTLQNHVQQQRRKAYNLVLKLENTV*

>peptide 6 (35 aa)
MMLHLWQIGLFLIIKSPPQNPFLNSPLFWLYLKQI*

Sequence

>CNT0004337
TTGAGTGAATTGTGTAACAGAGGGAAGCTTCACAAACTAGTGTTTAAACCACCACAAGATACTGAAAACACACTTCAAAACCATGTACAACAACAGAGAA
GGAAAGCTTACAACCTTGTACTTAAACTAGAAAATACTGTCTGATACCAAAGATTTCATGGACTACCATATAGAATGCCTTCCCACTTCTACGATTGCGC
CTAAAGTTTATAAGTATATTATACCCTGGAATCCATGCATTGAATTGTCCTTCCAAGGGTGAGTCAGGGTGCGGTTACTTCCATAATCCGCGGCATATTA
TCAATGATCTTTGTTGGCACATTTGCAGCACTGACTGTGGTTAACTTCTGGTCATAAGCTGAAAGATGGACTCCTAATGCCGCCCTGCCAGAAGGATCAA
GGTTATTTGACCACGCAGAATCCCATTCAACTGCTTTGGCAGTGCTGCATGCAACGCTTGCTCCTCCCGGAACAGTCAGCCTAGCTGAGTTCTGTAGAAC
AGAAATTGACAATGAATAAGCATGATGAAGTTAGTTTTATATGTCACGTATGTGACTAGTGTTGTATTACAGGATTAGGTCAGATTCGATCAGATCACCT
GTGGGAAGAACCTCTCAAAGATCATTCGGTAATAGTAGGCTTCTTTTGTGGTAGGGGTATTGTGTGGGAAGATATGTGAAGCATTGAGCATCATTTTATC
GGTCACCTGAAGGTAGGAGTTACATGTTAATCATGAGTTAGACCAATCAAATATCCTTGGAAAAAGTAAAAATCCAGATGAACATCAGATAGATATTTAC
ATGTTGTGACGCATGGGCTTTGAGCCCATCAATCCAACTGTAGCCGACACCATCACTGAATTGCTCTTTTTGCCTGTAGAGAATATGCTGCAGGGAATCA
AATCATTGACTGAGCTCGTTAGTTTCATTTGTTAATCTGATCAATGGGCACGAAACAGTAAAAGAACACTGGAAATTATGATGTTACACCTTTGGCAGAT
AGGGTTGTTCCTCATCATCAAAAGCCCTCCTCAGAACCCATTTCTCAATTCGCCCTTGTTCTGGCTTTATCTGAAACAGATTTGAAGCTGTTATCAGAGA
ATCTACTTGATAAACTTAGAATTTTTTGCAACCCACATTAAAATAAGCAATCTAATTGATAATTGAATTTTTTTTTTAATACCATCTTCCACTCAGGGTC
AATATCCATTGCAACTTTAATGAATTCCTTGTCTAAAAAGGGGACCCGGGCTTCCAAACCCCATGCAGATGTTGATTTATTAGCTCTCAAGCAATCATAC
TGGTAGAGTGCCTTTATCTGCATACAAACAAGGCCATGGAAGACTTTACTTCAATCACTTTGGATTGAAGGATGCAGATATAAAACCAGACGCCTTGCAT
AAAATCTGTTACCTTGCGACATGTTTCCCTATGGAACTCTTCCTTGTTGGGCGCCTTGTGAAAGTATAAGTACCCACCAAAAATCTCATCAGAGCCCTCT
CCGGATATCACCATCTTCACTCCTAGTGACTTAATCTTACGCGACATGAGAAACATAGGGGTACTTGCTCGGATCGTTGTCACATCATAAGTTTCAATAT
GGTAAATAACATCCTCAATGGCATCGATACCATCCTGCCACACAAAGATGATGAATTCCTAACTTTGT

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
VIT_06s0004g06830.t01 Asparagine synthetase protein coding CNT0004337 4558 1625 CDS_UTR Cis