« Back to Arabidopsis thaliana search


Detailed information on CNT0043554


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005350, E-value = 1e-10 (V. vinifera)
CNT0033726, E-value = 1e-07 (P. patens)
CNT0019995, E-value = 3e-08 (Z. mays)
CNT0002061, E-value = 2e-09 (G. max)
CNT0022638, E-value = 2e-12 (A. trichopoda)
CNT0032384, E-value = 3e-08 (O. sativa)
CNT0009344, E-value = 1e-10 (S. tuberosum)
CNT0039778, E-value = 5e-07 (S. moellendorffii)
CNT0036613, E-value = 6e-10 (C. reinhardtii)

Expression of CNT0043554

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MLGRRLGSQEKTKVKVECLSLSLSLSLTHTHTHTHTQPKQNTKHSNTTENRAPNTLT*

Sequence

>CNT0043554
ATGTGCAAGCAGGGAAGATTTAAGGAAAAGTTATACGCGGAAAGAAGTTAAGATATTGAGAAGTTAAGAGCTCTGAACATGGAGCACTTTGATAACGTCT
TGCAAGATGGCCAGTGAAGTGTATCCCTATGCCCCGGATGCTTGTAATTTGACTACATGCTAATTGATTCTCTGTTTTCTCTCTTTTACTTCATGTCTTC
CTGTTGAAATGAGCTTTTAAATTGCTCAACTGTAAGTCACAGGAGGTGCTTGTTTCTGGATTAATTTGAGGAGATAATACTGAAAGGGTAAACTTTGGTC
GCTAGTGGTAACAATATGTATTTGGTGCTTACGTCAAAATAACTAAGCATGTACTGGTTTTATACACATGGGAAAAGCCAAAACTGTTGCTAATTCATTG
TTTCCGTTTTAGGAGGATTGGATTTTTATGCTGGGGAGACGATTGGGTAGCCAAGAGAAAACGAAAGTTAAGGTAGAGTGTCTCTCTCTCTCTCTCTCTC
TCTCTCTCACACACACACACACACACACACACACACAACCTAAACAAAACACAAAACACTCAAACACAACAGAAAACAGAGCACCAAACACGCTTACATA
AAGTTAAACACAACCAAAAACCAGAAAACAAAACACGAATGCACAAAATAATCAAACACAACCAAGAAAAAAAAAAAAACATAGTCTCTTTATAAGGAAT
TTGTTTTCAGGCTTTTTCTTGTTTATATTAAATCCACTATGACTCTAACGTCAACCCCTGGTCAACTAAGTTAT