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Detailed information on CNT0043803


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q67Y83|SCP51_ARATH, E-value = 4e-25

BLAST vs NONCODE (A. thaliana):
NONATHT003733, E-value = 0.0

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0033117, E-value = 2e-09 (P. patens)
CNT0019112, E-value = 2e-10 (Z. mays)
CNT0031085, E-value = 4e-11 (O. sativa)
CNT0014187, E-value = 1e-14 (S. tuberosum)
CNT0036264, E-value = 5e-66 (C. reinhardtii)

Expression of CNT0043803

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MLIVYIWFNILSSLQSYRQKFGCCTQVRISKYSSNFYWTSRG*

>peptide 2 (61 aa)
MGSPEEAVEVAVVEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEER*

>peptide 3 (109 aa)
MKQETIQLENVQKVEEAEVVQETEKRKKVHHGFDLNKTFYYEDGGEFHPGDGFVQETEKDKNVQPKFDSNGFTVFADGELDPNKEIQKTIIDMYKIYWPH
VYGEFHPKK*

>peptide 4 (68 aa)
MLVRGAITIVIIAIKPSTRLIFNKKAKQILDKLFIKIYIINVYLFLELINGYNNYSRFIIVTDGTSCR*

>peptide 5 (39 aa)
MKMEESFTLEMDLFKKRKKTKTFNLNSIQMDLQFLQMES*

>peptide 6 (28 aa)
MVSFHEIVILGKTLLIQERNPSLSQKVCA

>peptide 7 (35 aa)
MEHHVGERTEKNSKDNDIVIDDNMDNHNISLFFSE*

Sequence

>CNT0043803
CCTTGTTAAATTTCTTTTCCTAAATTTAAGCAATATCTATTGAACTGACGAAAAAAAAGAATATCTATTTAACTAAACAAAATTCAAAACTCTTTTGATC
TCTCACTTCCATTTGCTGATTTATTTTGGAATTCCTCTCATTCCTCTCACTCCTCTCTACAAACTCCGAAAACATAAAAAATGAAACAAGAAACGATTCA
ATTGGAAAATGTTCAGAAGGTGGAAGAAGCAGAGGTTGTTCAAGAAACGGAGAAAAGAAAAAAAGTTCATCATGGATTTGATCTAAACAAAACGTTTTAT
TATGAAGATGGAGGAGAGTTTCACCCTGGAGATGGATTTGTTCAAGAAACGGAAAAAGACAAAAACGTTCAACCTAAATTCGATTCAAATGGATTTACAG
TTTTTGCAGATGGAGAGCTAGACCCAAATAAAGAAATTCAAAAAACCATAATAGATATGTATAAAATTTATTGGCCACACGTCTATGGAGAATTTCACCC
AAAAAAGTAATAAATAGGTTTGCTTAATTAGTTTTTGTTTATTAATTTCATGCTGAATAAGTTTTTCTAGATTGCATGAAATAGAAAAACAAGTTTTTAT
TGTGATTTAATAATCATATCAATATTCAGGTTTTATTGTAGTCGAACTACGCCTAAGTGTATGCTGGTCCGGGGAGCTATTACCATAGTTATTATAGCCA
TAAAACCTTCCACTCGTCTAATATTTAATAAGAAAGCAAAACAAATTCTCGATAAATTATTCATCAAAATTTACATAATAAATGTGTATTTGTTTTTAGA
ACTTATAAATGGATATAACAACTATAGTAGATTCATTATAGTTACCGATGGAACATCATGTAGGTGAAAGAACGGAGAAGAACAGTAAGGACAATGATAT
TGTGATTGACGACAACATGGACAACCACAATATCAGTCTTTTTTTCTCTGAATAAAATGAAACTAATAATGTAGTAGACAAATAATTCTATTTTATAATA
TGTGTGATTAGGAGTGATTTTGGGAGATAGTTGGATATCCCCTGAAGATTTTGTGGTGAGTTTCATCATTTTTTTAAAACATGTTACTCTTATTTATTTA
TGATTAAATTCTATTCATATGATTTTTATTGATTAATTGTTACAGTTTTCATGGGGACCTCTTCTCAAGCATGTCTCTAGGCTTGATGACAATGGCTTGG
ATAGCTCTAATAGGTCTTTATCTTAATACAAAATCAATTTTTCTAATACGTAATTAATTTACCTCTCTAATCTATATAGTTTACTTTTTTTTGGAGCAGC
TTAGCAGAGAAGATTAAAAGACAAATTAAAAATGGTGAATACGTTGGAGCGACGCAAACATGGATGGACCTCGAAAACTTGATTAGTTCCAAATCCAATT
TCGTCGTAAATTATTTCTCCTCTTATTTTTAAATTCATTAGTATGTACAATTATAAAGATTTGATGATAAAGTGAGTATTTACTATAGGTTACAGGGTAA
AAAAAAAATAAAGAATCAGCCATTCGTGATACAACAATTTGAATATATGTTAAGTCATTAGAAAATATGTTTGAAATTTTTGATTGAATGTTTTTAATTC
ACATTTTAAAAACAAAAGAAAGTTTATTAAATATTTATTAACAAACTATATATTAAAAACACACATCTTATCTCAAAATTGGCTCTAATACACCTTAAAT
TTACTTAAACAAAAATAATGGTTTAGAAAAAAGAAGTAAAAATTCTAAATTACAAAATCTATGGGCTCACCGGAGGAAGCGGTGGAAGTAGCGGTGGTGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAAGGTGAGATGCTAAGCTCGAAGCCTAACTTAGAACAGAAATGGAATTCGATGAGAAGAGA
ATAAGGTAAGAGAAGGAAGAAAGTTAGAGTAGGAGAATAATATGATTTTCAAAAGATAAGGAAACCCTAAAGTTTGGGATCCATTTAAATACAACTGAGT
TTAATAAACGACATCGTTTAACACAATTGTACAATTGAAACAGAGGCTTCTCGACACTTCTTCTTTATTTATTCTTTTTATTTTTTTTTTGTTCAAAGTC
TCTACACTTCTTCTTTTCTTCACTTCTAGCCACTTTTCACCCATGTTTCTTCTCCCATTTACGAGCCCTCCTTCCACTGGTTCTCATCTTCTTCTTCATG
AAAGCTAAGGGTATCTTCAACCTATCAGAGTCGAATTGGTTTATCTCGGATCCGTTCAGCTCCAGCTACTTGGATTGAAACCCTACTCGAAGAAGATGAA
GAAGAAGGTTTAAAACCTAACCTTTGTTTAACATAGCTTCTTAGAGTGATAAGGAGTCGTGACTCGTTCGAGTTCCCAATTTCTGTTGATTGTACGATTA
TAGTTTAATTGGGTGTTTGAATTGGGTTTTGAATTCACGATTATAGTTTAATTGGATAGATTGAGTGTTGTCTCTGATAGTTGGTGAATGGTACTGAACA
AGTAGCTATTAAGATACTCTCCCATTCTTCATCTCAAGGATATAAACAATTCAAAGCTGAGGTAAATTCACACTTTCATCATTATCTAATTGAAACAAAA
GCATCAATGATTCAAATATTTTGAAGGATATATATCTATAACTTCTGATTTCTGGCTGGGTATTTAGGTAGAACTTCTTCTTAGAGTTCATCACAAGAAT
TTGGTAGGCCTTTGTTGGATACTGTGACGAAGGAGAGAACTTGGCTCTTATATATGAATACATGTCCAATGGAGATTTAAAAGAACACATGTCAGGTAAG
ACAATAATGACTAACTGTATTTTATCAGTTCTATAGTGCGAATATAAGACTTTAGCATTTATCTCAAAGTGTTCTTTTTAAACACAGGAACACGAAACCA
CTTCATTTTAAATTGGGGAACTAGAATAAAAATAGACATAGATTTTTGTAATGATGGAAATGCTATTCTTCGTGAGCTGGATTTTCATTTGTCTCTTACT
TTTGTATGCTTATCGTTTATATTTGGTTTAATATTCTCTCTTCTCTTCAAAGCTACAGGCAGAAATTCGGCTGTTGCACACAAGTCAGGATCTCTAAGTA
CTCCAGCAACTTCTACTGGACAAGCAGGGGATAATAAGTCTTTAGTAGTGCATGGTGTCGTTCCACGAGATAGTGATATTGGGAAAGACTCTTCTGATTC
AGGAAAGGAATCCATCACTTTCTCAAAAAGTTTGTGCTAG

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
AT5G33220.1 transposable element gene transposable element CNT0043803 803 326 noncoding Trans