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Detailed information on CNT0043959


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9FGM1|PYL8_ARATH, E-value = 8e-14

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0000974, E-value = 1e-08 (G. max)

Expression of CNT0043959

Sequence

>CNT0043959
TACCAATCTCCATGTTTCCTTTCACCACACATCTACTGATAAACGGCTTATACTTCTGTGGCTGATCAAATCTTCTCACAAGTGACCACACCTATTCACC
AGAGAGATTCAAACTAATCCATAAGCGTTTTTGGGAGCTTTTTTTTCCAATAAAGCAAAACCAGATCAAACAAACTCAGATTGGGATTACACAAATGCTA
TGTAAGCTTTCAATAATTAGAAACCAATCGATTCTTCATCAGTAAGATCAACAATCGATG

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
AT5G53160.1 regulatory components of ABA receptor 3 protein coding CNT0043959 710 260 CDS Cis
AT5G53160.2 regulatory components of ABA receptor 3 protein coding CNT0043959 710 260 CDS Cis